Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP2AO43633 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP2AO43633 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC21.13■□□□□ 0.97
CHMP2AO43633 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP2AO43633 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP2AO43633 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP2AO43633 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP2AO43633 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP2AO43633 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC21.13■□□□□ 0.97
CHMP2AO43633 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC21.13■□□□□ 0.97
CHMP2AO43633 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP2AO43633 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP2AO43633 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC21.13■□□□□ 0.97
CHMP2AO43633 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC21.13■□□□□ 0.97
CHMP2AO43633 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CHMP2AO43633 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP2AO43633 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CHMP2AO43633 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC21.13■□□□□ 0.97
CHMP2AO43633 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP2AO43633 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
CHMP2AO43633 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CHMP2AO43633 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP2AO43633 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP2AO43633 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC21.12■□□□□ 0.97
CHMP2AO43633 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP2AO43633 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP2AO43633 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP2AO43633 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC21.12■□□□□ 0.97
CHMP2AO43633 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
CHMP2AO43633 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
CHMP2AO43633 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP2AO43633 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP2AO43633 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP2AO43633 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP2AO43633 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP2AO43633 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC21.12■□□□□ 0.97
CHMP2AO43633 ILF2-202ENST00000368681 726 ntTSL 2 BASIC21.12■□□□□ 0.97
CHMP2AO43633 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC21.12■□□□□ 0.97
CHMP2AO43633 AK4P3-201ENST00000418260 669 ntBASIC21.12■□□□□ 0.97
CHMP2AO43633 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC21.12■□□□□ 0.97
CHMP2AO43633 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC21.12■□□□□ 0.97
CHMP2AO43633 DUX4L26-201ENST00000489078 1255 ntBASIC21.12■□□□□ 0.97
CHMP2AO43633 COX11P1-201ENST00000489116 835 ntBASIC21.12■□□□□ 0.97
CHMP2AO43633 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC21.12■□□□□ 0.97
CHMP2AO43633 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC21.12■□□□□ 0.97
CHMP2AO43633 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC21.12■□□□□ 0.97
CHMP2AO43633 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
CHMP2AO43633 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP2AO43633 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP2AO43633 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP2AO43633 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CHMP2AO43633 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC21.12■□□□□ 0.97
CHMP2AO43633 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
CHMP2AO43633 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC21.11■□□□□ 0.97
CHMP2AO43633 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP2AO43633 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP2AO43633 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP2AO43633 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP2AO43633 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC21.11■□□□□ 0.97
CHMP2AO43633 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP2AO43633 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CHMP2AO43633 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC21.11■□□□□ 0.97
CHMP2AO43633 YBX1P2-201ENST00000489612 999 ntBASIC21.11■□□□□ 0.97
CHMP2AO43633 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC21.11■□□□□ 0.97
CHMP2AO43633 MIR3180-5-201ENST00000583743 153 ntBASIC21.11■□□□□ 0.97
CHMP2AO43633 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC21.11■□□□□ 0.97
CHMP2AO43633 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP2AO43633 KRT8P32-201ENST00000512863 1461 ntBASIC21.11■□□□□ 0.97
CHMP2AO43633 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP2AO43633 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP2AO43633 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CHMP2AO43633 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC21.1■□□□□ 0.97
CHMP2AO43633 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC21.1■□□□□ 0.97
CHMP2AO43633 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP2AO43633 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP2AO43633 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP2AO43633 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC21.1■□□□□ 0.97
CHMP2AO43633 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP2AO43633 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC21.1■□□□□ 0.97
CHMP2AO43633 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
CHMP2AO43633 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC21.1■□□□□ 0.97
CHMP2AO43633 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
CHMP2AO43633 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP2AO43633 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.1■□□□□ 0.97
CHMP2AO43633 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP2AO43633 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC21.1■□□□□ 0.97
CHMP2AO43633 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP2AO43633 ANKRD20A18P-201ENST00000359341 492 ntBASIC21.1■□□□□ 0.97
CHMP2AO43633 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP2AO43633 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
CHMP2AO43633 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP2AO43633 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC21.1■□□□□ 0.97
CHMP2AO43633 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC21.1■□□□□ 0.97
CHMP2AO43633 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC21.1■□□□□ 0.97
CHMP2AO43633 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC21.1■□□□□ 0.97
CHMP2AO43633 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP2AO43633 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CHMP2AO43633 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
CHMP2AO43633 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CHMP2AO43633 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms