Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TMX2-CTNND1H3BSU7 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
TMX2-CTNND1H3BSU7 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TMX2-CTNND1H3BSU7 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TMX2-CTNND1H3BSU7 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TMX2-CTNND1H3BSU7 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TMX2-CTNND1H3BSU7 PRSS44-201ENST00000515154 1146 ntBASIC18.44■□□□□ 0.54
TMX2-CTNND1H3BSU7 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
TMX2-CTNND1H3BSU7 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC18.44■□□□□ 0.54
TMX2-CTNND1H3BSU7 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TMX2-CTNND1H3BSU7 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TMX2-CTNND1H3BSU7 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TMX2-CTNND1H3BSU7 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.44■□□□□ 0.54
TMX2-CTNND1H3BSU7 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.44■□□□□ 0.54
TMX2-CTNND1H3BSU7 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.44■□□□□ 0.54
TMX2-CTNND1H3BSU7 AC018470.1-201ENST00000624790 3129 ntBASIC18.44■□□□□ 0.54
TMX2-CTNND1H3BSU7 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TMX2-CTNND1H3BSU7 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.43■□□□□ 0.54
TMX2-CTNND1H3BSU7 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TMX2-CTNND1H3BSU7 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TMX2-CTNND1H3BSU7 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TMX2-CTNND1H3BSU7 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TMX2-CTNND1H3BSU7 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.43■□□□□ 0.54
TMX2-CTNND1H3BSU7 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.43■□□□□ 0.54
TMX2-CTNND1H3BSU7 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
TMX2-CTNND1H3BSU7 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.43■□□□□ 0.54
TMX2-CTNND1H3BSU7 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TMX2-CTNND1H3BSU7 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TMX2-CTNND1H3BSU7 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TMX2-CTNND1H3BSU7 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TMX2-CTNND1H3BSU7 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
TMX2-CTNND1H3BSU7 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TMX2-CTNND1H3BSU7 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TMX2-CTNND1H3BSU7 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.43■□□□□ 0.54
TMX2-CTNND1H3BSU7 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 AC008622.2-201ENST00000617006 1229 ntBASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.42■□□□□ 0.54
TMX2-CTNND1H3BSU7 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 PCED1CP-201ENST00000419887 785 ntBASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 DAP-202ENST00000432074 1048 ntTSL 2 BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 AC009947.2-201ENST00000444014 672 ntBASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 AP003041.3-201ENST00000527151 707 ntBASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.41■□□□□ 0.54
TMX2-CTNND1H3BSU7 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms