Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 Z85996.1-201ENST00000494644 937 ntBASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 AC124016.1-201ENST00000609552 612 ntBASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CPSF4LA6NMK7 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 AC135050.7-201ENST00000624508 2218 ntBASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CPSF4LA6NMK7 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 AC110285.5-201ENST00000611501 352 ntBASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 AL390961.4-201ENST00000623958 2535 ntBASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 AC018470.1-201ENST00000624790 3129 ntBASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.34■□□□□ 0.37
CPSF4LA6NMK7 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CPSF4LA6NMK7 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CPSF4LA6NMK7 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.33■□□□□ 0.37
CPSF4LA6NMK7 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.37
CPSF4LA6NMK7 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
CPSF4LA6NMK7 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
CPSF4LA6NMK7 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
CPSF4LA6NMK7 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.33■□□□□ 0.37
CPSF4LA6NMK7 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.33■□□□□ 0.37
CPSF4LA6NMK7 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.37
CPSF4LA6NMK7 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
CPSF4LA6NMK7 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CPSF4LA6NMK7 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms