Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
SSX2IPQ9Y2D8 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
SSX2IPQ9Y2D8 LINC01311-201ENST00000565162 1445 ntBASIC20.21■□□□□ 0.83
SSX2IPQ9Y2D8 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SSX2IPQ9Y2D8 BET1L-202ENST00000332865 533 ntTSL 5 BASIC20.21■□□□□ 0.83
SSX2IPQ9Y2D8 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC20.21■□□□□ 0.83
SSX2IPQ9Y2D8 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.21■□□□□ 0.83
SSX2IPQ9Y2D8 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20.21■□□□□ 0.83
SSX2IPQ9Y2D8 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.21■□□□□ 0.83
SSX2IPQ9Y2D8 CR769767.2-201ENST00000622735 460 ntBASIC20.21■□□□□ 0.83
SSX2IPQ9Y2D8 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SSX2IPQ9Y2D8 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SSX2IPQ9Y2D8 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SSX2IPQ9Y2D8 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SSX2IPQ9Y2D8 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
SSX2IPQ9Y2D8 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 TSPY23P-201ENST00000440136 739 ntBASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 CD81-212ENST00000526072 1172 ntTSL 5 BASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC20.2■□□□□ 0.82
SSX2IPQ9Y2D8 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC20.19■□□□□ 0.82
SSX2IPQ9Y2D8 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 ILF2-202ENST00000368681 726 ntTSL 2 BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 MIR4674-201ENST00000582457 87 ntBASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 AC083849.1-201ENST00000615227 514 ntBASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 HYMAI.1-201ENST00000620949 238 ntBASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SSX2IPQ9Y2D8 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SSX2IPQ9Y2D8 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.17■□□□□ 0.82
SSX2IPQ9Y2D8 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.17■□□□□ 0.82
SSX2IPQ9Y2D8 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SSX2IPQ9Y2D8 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.17■□□□□ 0.82
SSX2IPQ9Y2D8 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms