Protein–RNA interactions for Protein: Q9UQ88

CDK11A, Cyclin-dependent kinase 11A, humanhuman

Predicted RBP Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK11AQ9UQ88 AC009078.2-202ENST00000463353 338 ntBASIC29.04■■■□□ 2.24
CDK11AQ9UQ88 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC29.04■■■□□ 2.24
CDK11AQ9UQ88 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
CDK11AQ9UQ88 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC29.04■■■□□ 2.24
CDK11AQ9UQ88 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
CDK11AQ9UQ88 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC29.04■■■□□ 2.24
CDK11AQ9UQ88 TREX1-205ENST00000625293 1783 ntBASIC29.03■■■□□ 2.24
CDK11AQ9UQ88 FEM1AP3-201ENST00000403722 1741 ntBASIC29.03■■■□□ 2.24
CDK11AQ9UQ88 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
CDK11AQ9UQ88 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC29.03■■■□□ 2.24
CDK11AQ9UQ88 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC29.03■■■□□ 2.24
CDK11AQ9UQ88 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
CDK11AQ9UQ88 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC29.03■■■□□ 2.24
CDK11AQ9UQ88 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC29.03■■■□□ 2.24
CDK11AQ9UQ88 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC29.03■■■□□ 2.24
CDK11AQ9UQ88 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC29.03■■■□□ 2.24
CDK11AQ9UQ88 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC29.03■■■□□ 2.24
CDK11AQ9UQ88 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC29.03■■■□□ 2.24
CDK11AQ9UQ88 TK1-205ENST00000590862 642 ntTSL 3 BASIC29.03■■■□□ 2.24
CDK11AQ9UQ88 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
CDK11AQ9UQ88 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
CDK11AQ9UQ88 AC112907.3-201ENST00000577781 2400 ntBASIC29.03■■■□□ 2.24
CDK11AQ9UQ88 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
CDK11AQ9UQ88 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
CDK11AQ9UQ88 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
CDK11AQ9UQ88 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
CDK11AQ9UQ88 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
CDK11AQ9UQ88 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC29.02■■■□□ 2.24
CDK11AQ9UQ88 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC29.02■■■□□ 2.24
CDK11AQ9UQ88 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
CDK11AQ9UQ88 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
CDK11AQ9UQ88 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC29.02■■■□□ 2.24
CDK11AQ9UQ88 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
CDK11AQ9UQ88 IGHV3-41-201ENST00000613121 348 ntBASIC29.02■■■□□ 2.24
CDK11AQ9UQ88 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC29.02■■■□□ 2.24
CDK11AQ9UQ88 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
CDK11AQ9UQ88 PBK-203ENST00000522944 1499 ntTSL 2 BASIC29.02■■■□□ 2.24
CDK11AQ9UQ88 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
CDK11AQ9UQ88 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC29.02■■■□□ 2.24
CDK11AQ9UQ88 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC29.02■■■□□ 2.24
CDK11AQ9UQ88 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC29.01■■■□□ 2.24
CDK11AQ9UQ88 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC29.01■■■□□ 2.24
CDK11AQ9UQ88 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.24
CDK11AQ9UQ88 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC29.01■■■□□ 2.23
CDK11AQ9UQ88 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
CDK11AQ9UQ88 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
CDK11AQ9UQ88 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC29.01■■■□□ 2.23
CDK11AQ9UQ88 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC29.01■■■□□ 2.23
CDK11AQ9UQ88 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC29.01■■■□□ 2.23
CDK11AQ9UQ88 AP000347.1-202ENST00000435868 847 ntBASIC29.01■■■□□ 2.23
CDK11AQ9UQ88 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC29.01■■■□□ 2.23
CDK11AQ9UQ88 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC29.01■■■□□ 2.23
CDK11AQ9UQ88 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
CDK11AQ9UQ88 GPR32P1-201ENST00000601788 811 ntBASIC29.01■■■□□ 2.23
CDK11AQ9UQ88 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC29.01■■■□□ 2.23
CDK11AQ9UQ88 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC29.01■■■□□ 2.23
CDK11AQ9UQ88 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC29.01■■■□□ 2.23
CDK11AQ9UQ88 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
CDK11AQ9UQ88 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
CDK11AQ9UQ88 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC29.01■■■□□ 2.23
CDK11AQ9UQ88 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC29.01■■■□□ 2.23
CDK11AQ9UQ88 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC29■■■□□ 2.23
CDK11AQ9UQ88 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
CDK11AQ9UQ88 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC29■■■□□ 2.23
CDK11AQ9UQ88 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC29■■■□□ 2.23
CDK11AQ9UQ88 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC29■■■□□ 2.23
CDK11AQ9UQ88 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC29■■■□□ 2.23
CDK11AQ9UQ88 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC29■■■□□ 2.23
CDK11AQ9UQ88 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC29■■■□□ 2.23
CDK11AQ9UQ88 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC29■■■□□ 2.23
CDK11AQ9UQ88 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC29■■■□□ 2.23
CDK11AQ9UQ88 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC29■■■□□ 2.23
CDK11AQ9UQ88 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC29■■■□□ 2.23
CDK11AQ9UQ88 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC29■■■□□ 2.23
CDK11AQ9UQ88 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
CDK11AQ9UQ88 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC29■■■□□ 2.23
CDK11AQ9UQ88 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 PWWP2AP1-201ENST00000429776 2273 ntBASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 AC233702.3-201ENST00000578656 1387 ntBASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
CDK11AQ9UQ88 AC006333.2-201ENST00000607957 2099 ntBASIC28.98■■■□□ 2.23
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms