Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.76
SMARCAL1Q9NZC9 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SMARCAL1Q9NZC9 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SMARCAL1Q9NZC9 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
SMARCAL1Q9NZC9 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SMARCAL1Q9NZC9 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
SMARCAL1Q9NZC9 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SMARCAL1Q9NZC9 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SMARCAL1Q9NZC9 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
SMARCAL1Q9NZC9 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
SMARCAL1Q9NZC9 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCAL1Q9NZC9 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCAL1Q9NZC9 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCAL1Q9NZC9 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.82■□□□□ 0.76
SMARCAL1Q9NZC9 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.82■□□□□ 0.76
SMARCAL1Q9NZC9 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCAL1Q9NZC9 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCAL1Q9NZC9 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.82■□□□□ 0.76
SMARCAL1Q9NZC9 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC19.82■□□□□ 0.76
SMARCAL1Q9NZC9 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.82■□□□□ 0.76
SMARCAL1Q9NZC9 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCAL1Q9NZC9 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.82■□□□□ 0.76
SMARCAL1Q9NZC9 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCAL1Q9NZC9 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCAL1Q9NZC9 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SMARCAL1Q9NZC9 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC19.82■□□□□ 0.76
SMARCAL1Q9NZC9 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
SMARCAL1Q9NZC9 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC19.81■□□□□ 0.76
SMARCAL1Q9NZC9 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 AC120498.8-201ENST00000614275 531 ntBASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SMARCAL1Q9NZC9 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 PNMA6B-201ENST00000538162 1200 ntBASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
SMARCAL1Q9NZC9 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms