Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 AC008622.2-201ENST00000617006 1229 ntBASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CUEDC1Q9NWM3 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 KRT8P3-201ENST00000519669 1449 ntBASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CUEDC1Q9NWM3 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
CUEDC1Q9NWM3 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CUEDC1Q9NWM3 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CUEDC1Q9NWM3 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CUEDC1Q9NWM3 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CUEDC1Q9NWM3 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CUEDC1Q9NWM3 INGX-201ENST00000359239 846 ntBASIC18.18■□□□□ 0.5
CUEDC1Q9NWM3 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.18■□□□□ 0.5
CUEDC1Q9NWM3 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CUEDC1Q9NWM3 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CUEDC1Q9NWM3 NAPSB-206ENST00000562112 1266 ntBASIC18.18■□□□□ 0.5
CUEDC1Q9NWM3 C2orf69P3-201ENST00000565542 1120 ntBASIC18.18■□□□□ 0.5
CUEDC1Q9NWM3 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CUEDC1Q9NWM3 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CUEDC1Q9NWM3 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CUEDC1Q9NWM3 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.18■□□□□ 0.5
CUEDC1Q9NWM3 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CUEDC1Q9NWM3 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CUEDC1Q9NWM3 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.18■□□□□ 0.5
CUEDC1Q9NWM3 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CUEDC1Q9NWM3 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 BX323043.1-201ENST00000641006 1765 ntBASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 AC005521.1-201ENST00000393351 872 ntBASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 CA15P1-201ENST00000481698 905 ntBASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 AL023803.3-201ENST00000615559 522 ntBASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CUEDC1Q9NWM3 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CUEDC1Q9NWM3 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CUEDC1Q9NWM3 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.16■□□□□ 0.5
CUEDC1Q9NWM3 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CUEDC1Q9NWM3 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms