Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
TIMP4Q99727 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TIMP4Q99727 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.27■□□□□ 0.35
TIMP4Q99727 AC104417.2-201ENST00000562989 1793 ntBASIC17.27■□□□□ 0.35
TIMP4Q99727 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TIMP4Q99727 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
TIMP4Q99727 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
TIMP4Q99727 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.27■□□□□ 0.35
TIMP4Q99727 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.27■□□□□ 0.35
TIMP4Q99727 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
TIMP4Q99727 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TIMP4Q99727 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
TIMP4Q99727 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
TIMP4Q99727 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.26■□□□□ 0.35
TIMP4Q99727 LETM1P2-201ENST00000597330 2178 ntBASIC17.26■□□□□ 0.35
TIMP4Q99727 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
TIMP4Q99727 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
TIMP4Q99727 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TIMP4Q99727 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TIMP4Q99727 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TIMP4Q99727 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TIMP4Q99727 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TIMP4Q99727 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
TIMP4Q99727 KRT18P57-201ENST00000443599 1254 ntBASIC17.26■□□□□ 0.35
TIMP4Q99727 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
TIMP4Q99727 CKBP1-201ENST00000565489 1086 ntBASIC17.26■□□□□ 0.35
TIMP4Q99727 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
TIMP4Q99727 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.26■□□□□ 0.35
TIMP4Q99727 ZNF815P-204ENST00000434898 1737 ntBASIC17.26■□□□□ 0.35
TIMP4Q99727 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TIMP4Q99727 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TIMP4Q99727 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TIMP4Q99727 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TIMP4Q99727 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TIMP4Q99727 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.25■□□□□ 0.35
TIMP4Q99727 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TIMP4Q99727 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TIMP4Q99727 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TIMP4Q99727 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
TIMP4Q99727 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17.25■□□□□ 0.35
TIMP4Q99727 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TIMP4Q99727 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.25■□□□□ 0.35
TIMP4Q99727 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TIMP4Q99727 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.25■□□□□ 0.35
TIMP4Q99727 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.25■□□□□ 0.35
TIMP4Q99727 LIN28AP1-201ENST00000429574 405 ntBASIC17.25■□□□□ 0.35
TIMP4Q99727 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.25■□□□□ 0.35
TIMP4Q99727 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TIMP4Q99727 AC010203.1-204ENST00000548782 407 ntBASIC17.25■□□□□ 0.35
TIMP4Q99727 FAM87A-204ENST00000613235 858 ntBASIC17.25■□□□□ 0.35
TIMP4Q99727 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TIMP4Q99727 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TIMP4Q99727 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TIMP4Q99727 AL031598.1-201ENST00000561511 1773 ntBASIC17.25■□□□□ 0.35
TIMP4Q99727 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
TIMP4Q99727 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TIMP4Q99727 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TIMP4Q99727 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TIMP4Q99727 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
TIMP4Q99727 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TIMP4Q99727 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.24■□□□□ 0.35
TIMP4Q99727 FP475955.4-201ENST00000623131 1990 ntBASIC17.24■□□□□ 0.35
TIMP4Q99727 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TIMP4Q99727 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TIMP4Q99727 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC17.24■□□□□ 0.35
TIMP4Q99727 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TIMP4Q99727 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.24■□□□□ 0.35
TIMP4Q99727 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TIMP4Q99727 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TIMP4Q99727 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TIMP4Q99727 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TIMP4Q99727 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.24■□□□□ 0.35
TIMP4Q99727 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TIMP4Q99727 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
TIMP4Q99727 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
TIMP4Q99727 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.24■□□□□ 0.35
TIMP4Q99727 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.24■□□□□ 0.35
TIMP4Q99727 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.24■□□□□ 0.35
TIMP4Q99727 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.24■□□□□ 0.35
TIMP4Q99727 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.24■□□□□ 0.35
TIMP4Q99727 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.24■□□□□ 0.35
TIMP4Q99727 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TIMP4Q99727 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.24■□□□□ 0.35
TIMP4Q99727 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TIMP4Q99727 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
TIMP4Q99727 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TIMP4Q99727 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
TIMP4Q99727 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TIMP4Q99727 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TIMP4Q99727 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
TIMP4Q99727 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TIMP4Q99727 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TIMP4Q99727 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TIMP4Q99727 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TIMP4Q99727 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.23■□□□□ 0.35
TIMP4Q99727 KRT8P11-201ENST00000409686 1436 ntBASIC17.23■□□□□ 0.35
TIMP4Q99727 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
TIMP4Q99727 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.23■□□□□ 0.35
TIMP4Q99727 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.23■□□□□ 0.35
TIMP4Q99727 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms