Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL12A1Q99715 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.44■□□□□ 0.22
COL12A1Q99715 AC132008.2-207ENST00000454517 770 ntBASIC16.44■□□□□ 0.22
COL12A1Q99715 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.44■□□□□ 0.22
COL12A1Q99715 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC16.44■□□□□ 0.22
COL12A1Q99715 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL12A1Q99715 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL12A1Q99715 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL12A1Q99715 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
COL12A1Q99715 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL12A1Q99715 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL12A1Q99715 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.43■□□□□ 0.22
COL12A1Q99715 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL12A1Q99715 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.43■□□□□ 0.22
COL12A1Q99715 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL12A1Q99715 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.43■□□□□ 0.22
COL12A1Q99715 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL12A1Q99715 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL12A1Q99715 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL12A1Q99715 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL12A1Q99715 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.43■□□□□ 0.22
COL12A1Q99715 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.43■□□□□ 0.22
COL12A1Q99715 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
COL12A1Q99715 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL12A1Q99715 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL12A1Q99715 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL12A1Q99715 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL12A1Q99715 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL12A1Q99715 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL12A1Q99715 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC16.43■□□□□ 0.22
COL12A1Q99715 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.43■□□□□ 0.22
COL12A1Q99715 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL12A1Q99715 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL12A1Q99715 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
COL12A1Q99715 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL12A1Q99715 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.43■□□□□ 0.22
COL12A1Q99715 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.43■□□□□ 0.22
COL12A1Q99715 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL12A1Q99715 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
COL12A1Q99715 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC16.42■□□□□ 0.22
COL12A1Q99715 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL12A1Q99715 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL12A1Q99715 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
COL12A1Q99715 RPS2P28-201ENST00000314255 741 ntBASIC16.42■□□□□ 0.22
COL12A1Q99715 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL12A1Q99715 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.42■□□□□ 0.22
COL12A1Q99715 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC16.42■□□□□ 0.22
COL12A1Q99715 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL12A1Q99715 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC16.42■□□□□ 0.22
COL12A1Q99715 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL12A1Q99715 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
COL12A1Q99715 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC16.42■□□□□ 0.22
COL12A1Q99715 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
COL12A1Q99715 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL12A1Q99715 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
COL12A1Q99715 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL12A1Q99715 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.42■□□□□ 0.22
COL12A1Q99715 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL12A1Q99715 AC005332.3-201ENST00000589904 676 ntBASIC16.42■□□□□ 0.22
COL12A1Q99715 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
COL12A1Q99715 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL12A1Q99715 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
COL12A1Q99715 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL12A1Q99715 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL12A1Q99715 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL12A1Q99715 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
COL12A1Q99715 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC16.42■□□□□ 0.22
COL12A1Q99715 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
COL12A1Q99715 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.42■□□□□ 0.22
COL12A1Q99715 AC138761.1-201ENST00000584393 385 ntBASIC16.42■□□□□ 0.22
COL12A1Q99715 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
COL12A1Q99715 AC008608.2-201ENST00000606089 416 ntBASIC16.42■□□□□ 0.22
COL12A1Q99715 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
COL12A1Q99715 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC16.42■□□□□ 0.22
COL12A1Q99715 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL12A1Q99715 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL12A1Q99715 AC006128.1-201ENST00000624704 1661 ntBASIC16.41■□□□□ 0.22
COL12A1Q99715 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL12A1Q99715 MIR770-201ENST00000390219 98 ntBASIC16.41■□□□□ 0.22
COL12A1Q99715 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.41■□□□□ 0.22
COL12A1Q99715 KRT18P23-201ENST00000435622 1283 ntBASIC16.41■□□□□ 0.22
COL12A1Q99715 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL12A1Q99715 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.41■□□□□ 0.22
COL12A1Q99715 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL12A1Q99715 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
COL12A1Q99715 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL12A1Q99715 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL12A1Q99715 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL12A1Q99715 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
COL12A1Q99715 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16.41■□□□□ 0.22
COL12A1Q99715 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.41■□□□□ 0.22
COL12A1Q99715 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.41■□□□□ 0.22
COL12A1Q99715 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.41■□□□□ 0.22
COL12A1Q99715 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.41■□□□□ 0.22
COL12A1Q99715 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
COL12A1Q99715 AC079834.2-201ENST00000609776 1949 ntBASIC16.41■□□□□ 0.22
COL12A1Q99715 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
COL12A1Q99715 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
COL12A1Q99715 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
COL12A1Q99715 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms