Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 AC145285.3-201ENST00000564603 959 ntBASIC18.61■□□□□ 0.57
VPS13AQ96RL7 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS13AQ96RL7 AC104109.2-201ENST00000602919 1418 ntBASIC18.6■□□□□ 0.57
VPS13AQ96RL7 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC18.6■□□□□ 0.57
VPS13AQ96RL7 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS13AQ96RL7 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS13AQ96RL7 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.6■□□□□ 0.57
VPS13AQ96RL7 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS13AQ96RL7 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS13AQ96RL7 KRT18P23-201ENST00000435622 1283 ntBASIC18.6■□□□□ 0.57
VPS13AQ96RL7 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.6■□□□□ 0.57
VPS13AQ96RL7 AL591424.1-201ENST00000442569 1213 ntBASIC18.6■□□□□ 0.57
VPS13AQ96RL7 AC096582.2-201ENST00000510860 516 ntBASIC18.6■□□□□ 0.57
VPS13AQ96RL7 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.6■□□□□ 0.57
VPS13AQ96RL7 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.6■□□□□ 0.57
VPS13AQ96RL7 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS13AQ96RL7 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS13AQ96RL7 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.6■□□□□ 0.57
VPS13AQ96RL7 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.6■□□□□ 0.57
VPS13AQ96RL7 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
VPS13AQ96RL7 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS13AQ96RL7 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS13AQ96RL7 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 AC012640.2-201ENST00000561606 901 ntBASIC18.59■□□□□ 0.57
VPS13AQ96RL7 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 FAM215A-202ENST00000632077 792 ntBASIC18.59■□□□□ 0.57
VPS13AQ96RL7 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS13AQ96RL7 YBX2P1-201ENST00000394192 760 ntBASIC18.58■□□□□ 0.57
VPS13AQ96RL7 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.58■□□□□ 0.57
VPS13AQ96RL7 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.57
VPS13AQ96RL7 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
VPS13AQ96RL7 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.58■□□□□ 0.57
VPS13AQ96RL7 SDHAP1-207ENST00000440850 2000 ntBASIC18.58■□□□□ 0.57
VPS13AQ96RL7 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.58■□□□□ 0.57
VPS13AQ96RL7 MINOS1P3-201ENST00000457048 203 ntBASIC18.58■□□□□ 0.57
VPS13AQ96RL7 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC18.58■□□□□ 0.57
VPS13AQ96RL7 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
VPS13AQ96RL7 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS13AQ96RL7 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.58■□□□□ 0.56
VPS13AQ96RL7 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS13AQ96RL7 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS13AQ96RL7 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.56
VPS13AQ96RL7 LBH-203ENST00000404397 543 ntTSL 4 BASIC18.58■□□□□ 0.56
VPS13AQ96RL7 AC211486.1-202ENST00000416371 468 ntBASIC18.58■□□□□ 0.56
VPS13AQ96RL7 AC211476.1-201ENST00000503899 468 ntBASIC18.58■□□□□ 0.56
VPS13AQ96RL7 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS13AQ96RL7 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
VPS13AQ96RL7 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS13AQ96RL7 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS13AQ96RL7 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS13AQ96RL7 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VPS13AQ96RL7 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC18.57■□□□□ 0.56
VPS13AQ96RL7 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS13AQ96RL7 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS13AQ96RL7 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS13AQ96RL7 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS13AQ96RL7 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS13AQ96RL7 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS13AQ96RL7 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VPS13AQ96RL7 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
VPS13AQ96RL7 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS13AQ96RL7 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.57■□□□□ 0.56
VPS13AQ96RL7 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS13AQ96RL7 PRR29-209ENST00000582540 967 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS13AQ96RL7 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.57■□□□□ 0.56
VPS13AQ96RL7 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS13AQ96RL7 AC079834.2-201ENST00000609776 1949 ntBASIC18.57■□□□□ 0.56
VPS13AQ96RL7 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 AC005332.3-201ENST00000589904 676 ntBASIC18.56■□□□□ 0.56
VPS13AQ96RL7 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS13AQ96RL7 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms