Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
LRCH3Q96II8 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
LRCH3Q96II8 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC20.35■□□□□ 0.85
LRCH3Q96II8 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LRCH3Q96II8 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.35■□□□□ 0.85
LRCH3Q96II8 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
LRCH3Q96II8 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC20.35■□□□□ 0.85
LRCH3Q96II8 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LRCH3Q96II8 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.34■□□□□ 0.85
LRCH3Q96II8 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.34■□□□□ 0.85
LRCH3Q96II8 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LRCH3Q96II8 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.34■□□□□ 0.85
LRCH3Q96II8 LINC01521-201ENST00000504184 1943 ntBASIC20.34■□□□□ 0.85
LRCH3Q96II8 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LRCH3Q96II8 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.34■□□□□ 0.85
LRCH3Q96II8 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC20.34■□□□□ 0.85
LRCH3Q96II8 LHX6-205ENST00000464484 666 ntTSL 2 BASIC20.34■□□□□ 0.85
LRCH3Q96II8 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC20.34■□□□□ 0.85
LRCH3Q96II8 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC20.34■□□□□ 0.85
LRCH3Q96II8 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC20.34■□□□□ 0.85
LRCH3Q96II8 AP005901.3-202ENST00000581653 237 ntBASIC20.34■□□□□ 0.85
LRCH3Q96II8 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC20.34■□□□□ 0.85
LRCH3Q96II8 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC20.34■□□□□ 0.85
LRCH3Q96II8 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC20.34■□□□□ 0.85
LRCH3Q96II8 FAM197Y3-203ENST00000618346 717 ntBASIC20.34■□□□□ 0.85
LRCH3Q96II8 LITAF-220ENST00000620789 692 ntTSL 5 BASIC20.34■□□□□ 0.85
LRCH3Q96II8 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LRCH3Q96II8 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LRCH3Q96II8 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
LRCH3Q96II8 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
LRCH3Q96II8 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.34■□□□□ 0.85
LRCH3Q96II8 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
LRCH3Q96II8 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
LRCH3Q96II8 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
LRCH3Q96II8 IMP4-203ENST00000409935 958 ntTSL 5 BASIC20.33■□□□□ 0.85
LRCH3Q96II8 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.33■□□□□ 0.85
LRCH3Q96II8 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.33■□□□□ 0.85
LRCH3Q96II8 IRF8-202ENST00000562492 946 ntTSL 3 BASIC20.33■□□□□ 0.85
LRCH3Q96II8 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC20.33■□□□□ 0.85
LRCH3Q96II8 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC20.33■□□□□ 0.85
LRCH3Q96II8 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LRCH3Q96II8 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
LRCH3Q96II8 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
LRCH3Q96II8 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LRCH3Q96II8 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
LRCH3Q96II8 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
LRCH3Q96II8 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LRCH3Q96II8 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
LRCH3Q96II8 AC036111.1-201ENST00000533973 1582 ntBASIC20.33■□□□□ 0.84
LRCH3Q96II8 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.33■□□□□ 0.84
LRCH3Q96II8 AC121338.2-201ENST00000622535 1744 ntBASIC20.33■□□□□ 0.84
LRCH3Q96II8 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LRCH3Q96II8 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
LRCH3Q96II8 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LRCH3Q96II8 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRCH3Q96II8 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRCH3Q96II8 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC20.32■□□□□ 0.84
LRCH3Q96II8 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.32■□□□□ 0.84
LRCH3Q96II8 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRCH3Q96II8 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC20.32■□□□□ 0.84
LRCH3Q96II8 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LRCH3Q96II8 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.32■□□□□ 0.84
LRCH3Q96II8 HNRNPDP1-201ENST00000439535 754 ntBASIC20.32■□□□□ 0.84
LRCH3Q96II8 AC145285.3-201ENST00000564603 959 ntBASIC20.32■□□□□ 0.84
LRCH3Q96II8 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
LRCH3Q96II8 AL355877.3-201ENST00000622820 899 ntBASIC20.32■□□□□ 0.84
LRCH3Q96II8 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LRCH3Q96II8 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.32■□□□□ 0.84
LRCH3Q96II8 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRCH3Q96II8 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRCH3Q96II8 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.32■□□□□ 0.84
LRCH3Q96II8 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRCH3Q96II8 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LRCH3Q96II8 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
LRCH3Q96II8 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
LRCH3Q96II8 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
LRCH3Q96II8 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
LRCH3Q96II8 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.31■□□□□ 0.84
LRCH3Q96II8 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRCH3Q96II8 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRCH3Q96II8 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRCH3Q96II8 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LRCH3Q96II8 WDR53-203ENST00000429115 683 ntTSL 2 BASIC20.31■□□□□ 0.84
LRCH3Q96II8 DNAJB3-201ENST00000446806 729 ntBASIC20.31■□□□□ 0.84
LRCH3Q96II8 COX20P2-201ENST00000452636 358 ntBASIC20.31■□□□□ 0.84
LRCH3Q96II8 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.31■□□□□ 0.84
LRCH3Q96II8 AC091607.1-201ENST00000490318 1060 ntBASIC20.31■□□□□ 0.84
LRCH3Q96II8 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC20.31■□□□□ 0.84
LRCH3Q96II8 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.31■□□□□ 0.84
LRCH3Q96II8 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
LRCH3Q96II8 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
LRCH3Q96II8 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.31■□□□□ 0.84
LRCH3Q96II8 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
LRCH3Q96II8 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
LRCH3Q96II8 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRCH3Q96II8 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRCH3Q96II8 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRCH3Q96II8 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRCH3Q96II8 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
LRCH3Q96II8 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms