Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RTL3Q8N8U3 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.29■□□□□ 0.68
RTL3Q8N8U3 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
RTL3Q8N8U3 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.29■□□□□ 0.68
RTL3Q8N8U3 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC19.29■□□□□ 0.68
RTL3Q8N8U3 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RTL3Q8N8U3 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RTL3Q8N8U3 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RTL3Q8N8U3 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
RTL3Q8N8U3 HMGA1P5-201ENST00000412453 271 ntBASIC19.29■□□□□ 0.68
RTL3Q8N8U3 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.29■□□□□ 0.68
RTL3Q8N8U3 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.29■□□□□ 0.68
RTL3Q8N8U3 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.29■□□□□ 0.68
RTL3Q8N8U3 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RTL3Q8N8U3 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RTL3Q8N8U3 MTMR9LP-203ENST00000426597 1545 ntBASIC19.29■□□□□ 0.68
RTL3Q8N8U3 CROCCP3-202ENST00000420820 1947 ntBASIC19.29■□□□□ 0.68
RTL3Q8N8U3 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
RTL3Q8N8U3 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RTL3Q8N8U3 AC008556.1-201ENST00000610908 2040 ntBASIC19.29■□□□□ 0.68
RTL3Q8N8U3 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 AC093525.10-201ENST00000625130 1569 ntBASIC19.28■□□□□ 0.68
RTL3Q8N8U3 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.28■□□□□ 0.68
RTL3Q8N8U3 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
RTL3Q8N8U3 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.27■□□□□ 0.68
RTL3Q8N8U3 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
RTL3Q8N8U3 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
RTL3Q8N8U3 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RTL3Q8N8U3 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.27■□□□□ 0.68
RTL3Q8N8U3 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
RTL3Q8N8U3 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC19.27■□□□□ 0.68
RTL3Q8N8U3 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RTL3Q8N8U3 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RTL3Q8N8U3 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.27■□□□□ 0.68
RTL3Q8N8U3 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.27■□□□□ 0.68
RTL3Q8N8U3 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
RTL3Q8N8U3 MIR3180-5-201ENST00000583743 153 ntBASIC19.27■□□□□ 0.68
RTL3Q8N8U3 LINC01023-201ENST00000606054 436 ntBASIC19.27■□□□□ 0.68
RTL3Q8N8U3 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
RTL3Q8N8U3 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
RTL3Q8N8U3 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.27■□□□□ 0.67
RTL3Q8N8U3 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
RTL3Q8N8U3 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.27■□□□□ 0.67
RTL3Q8N8U3 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RTL3Q8N8U3 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RTL3Q8N8U3 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RTL3Q8N8U3 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RTL3Q8N8U3 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RTL3Q8N8U3 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
RTL3Q8N8U3 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19.26■□□□□ 0.67
RTL3Q8N8U3 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
RTL3Q8N8U3 SLC25A3P1-201ENST00000443844 931 ntBASIC19.26■□□□□ 0.67
RTL3Q8N8U3 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.26■□□□□ 0.67
RTL3Q8N8U3 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.26■□□□□ 0.67
RTL3Q8N8U3 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC19.26■□□□□ 0.67
RTL3Q8N8U3 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
RTL3Q8N8U3 CR769767.2-201ENST00000622735 460 ntBASIC19.26■□□□□ 0.67
RTL3Q8N8U3 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.26■□□□□ 0.67
RTL3Q8N8U3 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
RTL3Q8N8U3 AC120498.9-201ENST00000339021 3867 ntBASIC19.26■□□□□ 0.67
RTL3Q8N8U3 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RTL3Q8N8U3 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
RTL3Q8N8U3 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RTL3Q8N8U3 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RTL3Q8N8U3 KRT8P45-201ENST00000414328 1447 ntBASIC19.25■□□□□ 0.67
RTL3Q8N8U3 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RTL3Q8N8U3 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
RTL3Q8N8U3 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
RTL3Q8N8U3 AC036111.1-201ENST00000533973 1582 ntBASIC19.25■□□□□ 0.67
RTL3Q8N8U3 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.25■□□□□ 0.67
RTL3Q8N8U3 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
RTL3Q8N8U3 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
RTL3Q8N8U3 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.25■□□□□ 0.67
RTL3Q8N8U3 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.25■□□□□ 0.67
RTL3Q8N8U3 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC19.25■□□□□ 0.67
RTL3Q8N8U3 WWOX-216ENST00000569818 525 ntBASIC19.25■□□□□ 0.67
RTL3Q8N8U3 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms