Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC29.42■■■□□ 2.3
VPS8Q8N3P4 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC29.42■■■□□ 2.3
VPS8Q8N3P4 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC29.42■■■□□ 2.3
VPS8Q8N3P4 AC093525.10-201ENST00000625130 1569 ntBASIC29.42■■■□□ 2.3
VPS8Q8N3P4 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
VPS8Q8N3P4 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
VPS8Q8N3P4 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC29.42■■■□□ 2.3
VPS8Q8N3P4 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC29.42■■■□□ 2.3
VPS8Q8N3P4 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC29.42■■■□□ 2.3
VPS8Q8N3P4 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC29.42■■■□□ 2.3
VPS8Q8N3P4 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
VPS8Q8N3P4 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC29.42■■■□□ 2.3
VPS8Q8N3P4 AL157888.1-201ENST00000631930 593 ntBASIC29.42■■■□□ 2.3
VPS8Q8N3P4 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
VPS8Q8N3P4 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC29.42■■■□□ 2.3
VPS8Q8N3P4 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
VPS8Q8N3P4 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
VPS8Q8N3P4 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC29.41■■■□□ 2.3
VPS8Q8N3P4 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC29.41■■■□□ 2.3
VPS8Q8N3P4 VENTXP5-201ENST00000523979 775 ntBASIC29.41■■■□□ 2.3
VPS8Q8N3P4 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC29.41■■■□□ 2.3
VPS8Q8N3P4 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC29.41■■■□□ 2.3
VPS8Q8N3P4 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
VPS8Q8N3P4 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
VPS8Q8N3P4 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC29.41■■■□□ 2.3
VPS8Q8N3P4 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC29.4■■■□□ 2.3
VPS8Q8N3P4 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
VPS8Q8N3P4 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
VPS8Q8N3P4 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
VPS8Q8N3P4 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC29.4■■■□□ 2.3
VPS8Q8N3P4 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
VPS8Q8N3P4 HBZP1-201ENST00000354915 429 ntBASIC29.4■■■□□ 2.3
VPS8Q8N3P4 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC29.4■■■□□ 2.3
VPS8Q8N3P4 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC29.4■■■□□ 2.3
VPS8Q8N3P4 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC29.4■■■□□ 2.3
VPS8Q8N3P4 TPM1-226ENST00000560959 925 ntTSL 2 BASIC29.4■■■□□ 2.3
VPS8Q8N3P4 AC087388.1-201ENST00000571370 1112 ntBASIC29.4■■■□□ 2.3
VPS8Q8N3P4 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC29.4■■■□□ 2.3
VPS8Q8N3P4 AC140113.3-201ENST00000605663 199 ntBASIC29.4■■■□□ 2.3
VPS8Q8N3P4 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC29.4■■■□□ 2.3
VPS8Q8N3P4 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
VPS8Q8N3P4 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC29.39■■■□□ 2.3
VPS8Q8N3P4 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
VPS8Q8N3P4 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
VPS8Q8N3P4 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
VPS8Q8N3P4 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
VPS8Q8N3P4 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC29.39■■■□□ 2.3
VPS8Q8N3P4 AC079602.3-201ENST00000623931 403 ntBASIC29.39■■■□□ 2.3
VPS8Q8N3P4 AL121956.5-201ENST00000625261 221 ntBASIC29.39■■■□□ 2.3
VPS8Q8N3P4 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC29.39■■■□□ 2.3
VPS8Q8N3P4 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC29.39■■■□□ 2.3
VPS8Q8N3P4 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
VPS8Q8N3P4 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
VPS8Q8N3P4 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC29.39■■■□□ 2.3
VPS8Q8N3P4 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC29.39■■■□□ 2.3
VPS8Q8N3P4 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
VPS8Q8N3P4 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
VPS8Q8N3P4 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC29.39■■■□□ 2.3
VPS8Q8N3P4 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
VPS8Q8N3P4 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.29
VPS8Q8N3P4 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.29
VPS8Q8N3P4 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.29
VPS8Q8N3P4 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC29.38■■■□□ 2.29
VPS8Q8N3P4 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
VPS8Q8N3P4 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC29.38■■■□□ 2.29
VPS8Q8N3P4 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC29.38■■■□□ 2.29
VPS8Q8N3P4 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC29.38■■■□□ 2.29
VPS8Q8N3P4 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
VPS8Q8N3P4 AC034232.1-201ENST00000506026 1064 ntBASIC29.38■■■□□ 2.29
VPS8Q8N3P4 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC29.38■■■□□ 2.29
VPS8Q8N3P4 NT5C-211ENST00000582170 653 ntTSL 3 BASIC29.38■■■□□ 2.29
VPS8Q8N3P4 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
VPS8Q8N3P4 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC29.38■■■□□ 2.29
VPS8Q8N3P4 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC29.38■■■□□ 2.29
VPS8Q8N3P4 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
VPS8Q8N3P4 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
VPS8Q8N3P4 CYP51A1P1-201ENST00000492267 1507 ntBASIC29.38■■■□□ 2.29
VPS8Q8N3P4 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
VPS8Q8N3P4 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC29.37■■■□□ 2.29
VPS8Q8N3P4 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC29.37■■■□□ 2.29
VPS8Q8N3P4 GRAMD4P1-201ENST00000435181 1110 ntBASIC29.37■■■□□ 2.29
VPS8Q8N3P4 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC29.37■■■□□ 2.29
VPS8Q8N3P4 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC29.37■■■□□ 2.29
VPS8Q8N3P4 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC29.37■■■□□ 2.29
VPS8Q8N3P4 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC29.37■■■□□ 2.29
VPS8Q8N3P4 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
VPS8Q8N3P4 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
VPS8Q8N3P4 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC29.37■■■□□ 2.29
VPS8Q8N3P4 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC29.37■■■□□ 2.29
VPS8Q8N3P4 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC29.37■■■□□ 2.29
VPS8Q8N3P4 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC29.37■■■□□ 2.29
VPS8Q8N3P4 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC29.37■■■□□ 2.29
VPS8Q8N3P4 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
VPS8Q8N3P4 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
VPS8Q8N3P4 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC29.37■■■□□ 2.29
VPS8Q8N3P4 LY6E-213ENST00000522528 606 ntTSL 3 BASIC29.37■■■□□ 2.29
VPS8Q8N3P4 CLN6-204ENST00000564752 900 ntTSL 3 BASIC29.37■■■□□ 2.29
VPS8Q8N3P4 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC29.37■■■□□ 2.29
VPS8Q8N3P4 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
VPS8Q8N3P4 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC29.36■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms