Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
KRT40Q6A162 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC21.79■■□□□ 1.08
KRT40Q6A162 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
KRT40Q6A162 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC21.79■■□□□ 1.08
KRT40Q6A162 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
KRT40Q6A162 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC21.79■■□□□ 1.08
KRT40Q6A162 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC21.79■■□□□ 1.08
KRT40Q6A162 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
KRT40Q6A162 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
KRT40Q6A162 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC21.79■■□□□ 1.08
KRT40Q6A162 CRAT-202ENST00000393384 973 ntTSL 2 BASIC21.79■■□□□ 1.08
KRT40Q6A162 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.79■■□□□ 1.08
KRT40Q6A162 REXO1L10P-201ENST00000615707 1290 ntBASIC21.79■■□□□ 1.08
KRT40Q6A162 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
KRT40Q6A162 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
KRT40Q6A162 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC21.79■■□□□ 1.08
KRT40Q6A162 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
KRT40Q6A162 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
KRT40Q6A162 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC21.79■■□□□ 1.08
KRT40Q6A162 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
KRT40Q6A162 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
KRT40Q6A162 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC21.78■■□□□ 1.08
KRT40Q6A162 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC21.78■■□□□ 1.08
KRT40Q6A162 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC21.78■■□□□ 1.08
KRT40Q6A162 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC21.78■■□□□ 1.08
KRT40Q6A162 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT40Q6A162 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT40Q6A162 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC21.78■■□□□ 1.08
KRT40Q6A162 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21.78■■□□□ 1.08
KRT40Q6A162 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC21.78■■□□□ 1.08
KRT40Q6A162 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC21.78■■□□□ 1.08
KRT40Q6A162 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC21.78■■□□□ 1.08
KRT40Q6A162 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT40Q6A162 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC21.78■■□□□ 1.08
KRT40Q6A162 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT40Q6A162 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT40Q6A162 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
KRT40Q6A162 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
KRT40Q6A162 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC21.77■■□□□ 1.08
KRT40Q6A162 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT40Q6A162 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT40Q6A162 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT40Q6A162 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
KRT40Q6A162 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC21.77■■□□□ 1.08
KRT40Q6A162 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
KRT40Q6A162 HEIH-201ENST00000623091 1652 ntBASIC21.77■■□□□ 1.08
KRT40Q6A162 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
KRT40Q6A162 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC21.77■■□□□ 1.08
KRT40Q6A162 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.77■■□□□ 1.08
KRT40Q6A162 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC21.77■■□□□ 1.08
KRT40Q6A162 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC21.77■■□□□ 1.08
KRT40Q6A162 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
KRT40Q6A162 ANO7L1-203ENST00000602586 1720 ntBASIC21.77■■□□□ 1.08
KRT40Q6A162 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT40Q6A162 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
KRT40Q6A162 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC21.77■■□□□ 1.07
KRT40Q6A162 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC21.77■■□□□ 1.07
KRT40Q6A162 KRT8P32-201ENST00000512863 1461 ntBASIC21.77■■□□□ 1.07
KRT40Q6A162 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC21.77■■□□□ 1.07
KRT40Q6A162 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC21.77■■□□□ 1.07
KRT40Q6A162 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
KRT40Q6A162 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
KRT40Q6A162 COBL-210ENST00000632460 1941 ntTSL 5 BASIC21.76■■□□□ 1.07
KRT40Q6A162 AC096733.2-201ENST00000609937 1394 ntBASIC21.76■■□□□ 1.07
KRT40Q6A162 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC21.76■■□□□ 1.07
KRT40Q6A162 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
KRT40Q6A162 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
KRT40Q6A162 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC21.76■■□□□ 1.07
KRT40Q6A162 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
KRT40Q6A162 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
KRT40Q6A162 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
KRT40Q6A162 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
KRT40Q6A162 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
KRT40Q6A162 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
KRT40Q6A162 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
KRT40Q6A162 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
KRT40Q6A162 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
KRT40Q6A162 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
KRT40Q6A162 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
KRT40Q6A162 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC21.76■■□□□ 1.07
KRT40Q6A162 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
KRT40Q6A162 NTF6B-201ENST00000591913 560 ntBASIC21.76■■□□□ 1.07
KRT40Q6A162 USF2-205ENST00000594064 1179 ntTSL 2 BASIC21.76■■□□□ 1.07
KRT40Q6A162 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC21.76■■□□□ 1.07
KRT40Q6A162 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC21.76■■□□□ 1.07
KRT40Q6A162 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
KRT40Q6A162 AC068587.9-201ENST00000641814 219 ntBASIC21.76■■□□□ 1.07
KRT40Q6A162 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC21.76■■□□□ 1.07
KRT40Q6A162 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
KRT40Q6A162 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC21.76■■□□□ 1.07
KRT40Q6A162 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
KRT40Q6A162 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC21.76■■□□□ 1.07
KRT40Q6A162 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
KRT40Q6A162 SNAI3-AS1-205ENST00000568633 2096 ntBASIC21.76■■□□□ 1.07
KRT40Q6A162 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC21.76■■□□□ 1.07
KRT40Q6A162 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
KRT40Q6A162 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC21.76■■□□□ 1.07
KRT40Q6A162 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC21.76■■□□□ 1.07
KRT40Q6A162 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
KRT40Q6A162 AC079598.2-202ENST00000546624 1451 ntBASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms