Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
CKS1BP61024 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC13.16□□□□□ -0.3
CKS1BP61024 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
CKS1BP61024 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC13.16□□□□□ -0.3
CKS1BP61024 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 TERF1P5-201ENST00000477545 1207 ntBASIC13.16□□□□□ -0.3
CKS1BP61024 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC13.16□□□□□ -0.3
CKS1BP61024 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC13.16□□□□□ -0.3
CKS1BP61024 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC13.16□□□□□ -0.3
CKS1BP61024 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC13.16□□□□□ -0.3
CKS1BP61024 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC13.16□□□□□ -0.3
CKS1BP61024 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC13.16□□□□□ -0.3
CKS1BP61024 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
CKS1BP61024 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
CKS1BP61024 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC13.16□□□□□ -0.3
CKS1BP61024 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC13.16□□□□□ -0.3
CKS1BP61024 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC13.16□□□□□ -0.3
CKS1BP61024 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC13.16□□□□□ -0.3
CKS1BP61024 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC13.16□□□□□ -0.3
CKS1BP61024 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
CKS1BP61024 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC13.15□□□□□ -0.3
CKS1BP61024 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC13.15□□□□□ -0.3
CKS1BP61024 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 PTGES2-AS1-201ENST00000443493 2100 ntBASIC13.15□□□□□ -0.3
CKS1BP61024 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
CKS1BP61024 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC13.15□□□□□ -0.3
CKS1BP61024 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
CKS1BP61024 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC13.15□□□□□ -0.3
CKS1BP61024 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
CKS1BP61024 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC13.15□□□□□ -0.3
CKS1BP61024 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
CKS1BP61024 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC13.15□□□□□ -0.3
CKS1BP61024 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
CKS1BP61024 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC13.15□□□□□ -0.3
CKS1BP61024 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
CKS1BP61024 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
CKS1BP61024 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
CKS1BP61024 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 LINC01465-201ENST00000408887 1940 ntBASIC13.15□□□□□ -0.3
CKS1BP61024 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC13.15□□□□□ -0.3
CKS1BP61024 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
CKS1BP61024 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
CKS1BP61024 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC13.15□□□□□ -0.31
CKS1BP61024 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
CKS1BP61024 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC13.15□□□□□ -0.31
CKS1BP61024 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
CKS1BP61024 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC13.14□□□□□ -0.31
CKS1BP61024 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
CKS1BP61024 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC13.14□□□□□ -0.31
CKS1BP61024 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CKS1BP61024 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CKS1BP61024 AL662844.4-201ENST00000606367 2838 ntBASIC13.14□□□□□ -0.31
CKS1BP61024 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC13.14□□□□□ -0.31
CKS1BP61024 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC13.14□□□□□ -0.31
CKS1BP61024 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
CKS1BP61024 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms