Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CLRN1P58418 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
CLRN1P58418 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC16.83■□□□□ 0.29
CLRN1P58418 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CLRN1P58418 PKD1P1-201ENST00000458669 6805 ntBASIC16.83■□□□□ 0.29
CLRN1P58418 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
CLRN1P58418 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CLRN1P58418 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLRN1P58418 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLRN1P58418 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLRN1P58418 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLRN1P58418 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC16.83■□□□□ 0.28
CLRN1P58418 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLRN1P58418 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLRN1P58418 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLRN1P58418 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC16.83■□□□□ 0.28
CLRN1P58418 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
CLRN1P58418 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CLRN1P58418 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CLRN1P58418 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC16.83■□□□□ 0.28
CLRN1P58418 AC011506.1-201ENST00000474329 610 ntBASIC16.83■□□□□ 0.28
CLRN1P58418 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLRN1P58418 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLRN1P58418 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
CLRN1P58418 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
CLRN1P58418 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC16.83■□□□□ 0.28
CLRN1P58418 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC16.83■□□□□ 0.28
CLRN1P58418 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC16.83■□□□□ 0.28
CLRN1P58418 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC16.83■□□□□ 0.28
CLRN1P58418 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC16.83■□□□□ 0.28
CLRN1P58418 AC130371.2-201ENST00000619443 611 ntBASIC16.83■□□□□ 0.28
CLRN1P58418 AC083906.6-201ENST00000641366 219 ntBASIC16.83■□□□□ 0.28
CLRN1P58418 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CLRN1P58418 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
CLRN1P58418 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
CLRN1P58418 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLRN1P58418 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLRN1P58418 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLRN1P58418 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC16.82■□□□□ 0.28
CLRN1P58418 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLRN1P58418 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLRN1P58418 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLRN1P58418 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLRN1P58418 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLRN1P58418 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC16.82■□□□□ 0.28
CLRN1P58418 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLRN1P58418 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC16.82■□□□□ 0.28
CLRN1P58418 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CLRN1P58418 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLRN1P58418 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLRN1P58418 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CLRN1P58418 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLRN1P58418 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC16.82■□□□□ 0.28
CLRN1P58418 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC16.82■□□□□ 0.28
CLRN1P58418 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC16.82■□□□□ 0.28
CLRN1P58418 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC16.82■□□□□ 0.28
CLRN1P58418 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
CLRN1P58418 AC233702.5-201ENST00000584107 538 ntBASIC16.82■□□□□ 0.28
CLRN1P58418 USP36-216ENST00000589424 970 ntTSL 5 BASIC16.82■□□□□ 0.28
CLRN1P58418 DECR2-212ENST00000627716 352 ntTSL 2 BASIC16.82■□□□□ 0.28
CLRN1P58418 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
CLRN1P58418 AL049637.2-201ENST00000641778 930 ntBASIC16.82■□□□□ 0.28
CLRN1P58418 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
CLRN1P58418 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLRN1P58418 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CLRN1P58418 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLRN1P58418 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC16.82■□□□□ 0.28
CLRN1P58418 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CLRN1P58418 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CLRN1P58418 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC16.81■□□□□ 0.28
CLRN1P58418 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CLRN1P58418 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.81■□□□□ 0.28
CLRN1P58418 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLRN1P58418 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CLRN1P58418 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLRN1P58418 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CLRN1P58418 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC16.81■□□□□ 0.28
CLRN1P58418 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC16.81■□□□□ 0.28
CLRN1P58418 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CLRN1P58418 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLRN1P58418 MIR718-201ENST00000390190 70 ntBASIC16.81■□□□□ 0.28
CLRN1P58418 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC16.81■□□□□ 0.28
CLRN1P58418 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC16.81■□□□□ 0.28
CLRN1P58418 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC16.81■□□□□ 0.28
CLRN1P58418 AL355355.2-201ENST00000442321 338 ntBASIC16.81■□□□□ 0.28
CLRN1P58418 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC16.81■□□□□ 0.28
CLRN1P58418 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLRN1P58418 NUDT16P1-203ENST00000513809 620 ntBASIC16.81■□□□□ 0.28
CLRN1P58418 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC16.81■□□□□ 0.28
CLRN1P58418 GRAP-204ENST00000573099 846 ntTSL 3 BASIC16.81■□□□□ 0.28
CLRN1P58418 AC113410.3-201ENST00000623366 203 ntBASIC16.81■□□□□ 0.28
CLRN1P58418 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLRN1P58418 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
CLRN1P58418 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CLRN1P58418 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLRN1P58418 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CLRN1P58418 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CLRN1P58418 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms