Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
CLK1P49759 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
CLK1P49759 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CLK1P49759 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLK1P49759 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CLK1P49759 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
CLK1P49759 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CLK1P49759 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CLK1P49759 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.66■□□□□ 0.42
CLK1P49759 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLK1P49759 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.66■□□□□ 0.42
CLK1P49759 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLK1P49759 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLK1P49759 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC17.66■□□□□ 0.42
CLK1P49759 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLK1P49759 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.66■□□□□ 0.42
CLK1P49759 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.66■□□□□ 0.42
CLK1P49759 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
CLK1P49759 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLK1P49759 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.66■□□□□ 0.42
CLK1P49759 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLK1P49759 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.66■□□□□ 0.42
CLK1P49759 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLK1P49759 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.66■□□□□ 0.42
CLK1P49759 NME1-207ENST00000480143 964 ntTSL 2 BASIC17.66■□□□□ 0.42
CLK1P49759 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.66■□□□□ 0.42
CLK1P49759 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.66■□□□□ 0.42
CLK1P49759 RN7SL471P-201ENST00000580476 299 ntBASIC17.66■□□□□ 0.42
CLK1P49759 MIR4651-201ENST00000582622 73 ntBASIC17.66■□□□□ 0.42
CLK1P49759 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.66■□□□□ 0.42
CLK1P49759 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLK1P49759 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLK1P49759 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLK1P49759 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLK1P49759 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.66■□□□□ 0.42
CLK1P49759 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLK1P49759 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLK1P49759 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLK1P49759 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.66■□□□□ 0.42
CLK1P49759 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.66■□□□□ 0.42
CLK1P49759 AC090164.3-201ENST00000610780 2143 ntBASIC17.66■□□□□ 0.42
CLK1P49759 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.66■□□□□ 0.42
CLK1P49759 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
CLK1P49759 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CLK1P49759 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLK1P49759 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLK1P49759 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLK1P49759 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.66■□□□□ 0.42
CLK1P49759 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLK1P49759 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
CLK1P49759 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CLK1P49759 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLK1P49759 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLK1P49759 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CLK1P49759 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLK1P49759 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
CLK1P49759 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC17.65■□□□□ 0.42
CLK1P49759 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CLK1P49759 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CLK1P49759 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLK1P49759 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLK1P49759 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CLK1P49759 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC17.65■□□□□ 0.42
CLK1P49759 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CLK1P49759 AC128676.1-201ENST00000454392 318 ntBASIC17.65■□□□□ 0.42
CLK1P49759 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.65■□□□□ 0.42
CLK1P49759 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.65■□□□□ 0.42
CLK1P49759 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CLK1P49759 AC004264.1-201ENST00000608354 794 ntBASIC17.65■□□□□ 0.42
CLK1P49759 AC073648.6-201ENST00000641589 218 ntBASIC17.65■□□□□ 0.42
CLK1P49759 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.65■□□□□ 0.42
CLK1P49759 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.65■□□□□ 0.42
CLK1P49759 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.65■□□□□ 0.42
CLK1P49759 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLK1P49759 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.65■□□□□ 0.42
CLK1P49759 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
CLK1P49759 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CLK1P49759 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLK1P49759 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLK1P49759 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLK1P49759 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CLK1P49759 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CLK1P49759 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.65■□□□□ 0.42
CLK1P49759 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.65■□□□□ 0.42
CLK1P49759 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
CLK1P49759 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
CLK1P49759 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLK1P49759 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.64■□□□□ 0.41
CLK1P49759 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLK1P49759 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.64■□□□□ 0.41
CLK1P49759 NBPF21P-201ENST00000425093 1451 ntBASIC17.64■□□□□ 0.41
CLK1P49759 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
CLK1P49759 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CLK1P49759 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLK1P49759 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CLK1P49759 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLK1P49759 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLK1P49759 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
CLK1P49759 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
CLK1P49759 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms