Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
SOX3P41225 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SOX3P41225 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
SOX3P41225 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
SOX3P41225 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SOX3P41225 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SOX3P41225 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SOX3P41225 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
SOX3P41225 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SOX3P41225 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
SOX3P41225 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SOX3P41225 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.7■□□□□ 0.42
SOX3P41225 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.7■□□□□ 0.42
SOX3P41225 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SOX3P41225 PRR31-201ENST00000371629 978 ntTSL 2 BASIC17.7■□□□□ 0.42
SOX3P41225 MFAP1P1-201ENST00000442257 1255 ntBASIC17.7■□□□□ 0.42
SOX3P41225 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.7■□□□□ 0.42
SOX3P41225 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.7■□□□□ 0.42
SOX3P41225 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.7■□□□□ 0.42
SOX3P41225 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.7■□□□□ 0.42
SOX3P41225 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SOX3P41225 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SOX3P41225 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SOX3P41225 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SOX3P41225 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SOX3P41225 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SOX3P41225 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SOX3P41225 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX3P41225 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX3P41225 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX3P41225 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.69■□□□□ 0.42
SOX3P41225 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX3P41225 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SOX3P41225 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX3P41225 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX3P41225 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX3P41225 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SOX3P41225 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.69■□□□□ 0.42
SOX3P41225 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX3P41225 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.69■□□□□ 0.42
SOX3P41225 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.69■□□□□ 0.42
SOX3P41225 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.69■□□□□ 0.42
SOX3P41225 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.69■□□□□ 0.42
SOX3P41225 AC010947.1-201ENST00000623454 693 ntBASIC17.69■□□□□ 0.42
SOX3P41225 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.69■□□□□ 0.42
SOX3P41225 AC104581.1-202ENST00000635932 2618 ntBASIC17.69■□□□□ 0.42
SOX3P41225 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SOX3P41225 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SOX3P41225 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX3P41225 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.69■□□□□ 0.42
SOX3P41225 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SOX3P41225 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
SOX3P41225 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.69■□□□□ 0.42
SOX3P41225 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX3P41225 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX3P41225 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.69■□□□□ 0.42
SOX3P41225 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.69■□□□□ 0.42
SOX3P41225 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
SOX3P41225 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.69■□□□□ 0.42
SOX3P41225 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SOX3P41225 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SOX3P41225 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX3P41225 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SOX3P41225 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX3P41225 AC096733.2-201ENST00000609937 1394 ntBASIC17.68■□□□□ 0.42
SOX3P41225 LINC01568-207ENST00000641790 1380 ntBASIC17.68■□□□□ 0.42
SOX3P41225 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX3P41225 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX3P41225 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX3P41225 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX3P41225 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX3P41225 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX3P41225 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
SOX3P41225 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX3P41225 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX3P41225 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.68■□□□□ 0.42
SOX3P41225 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC17.68■□□□□ 0.42
SOX3P41225 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.68■□□□□ 0.42
SOX3P41225 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.68■□□□□ 0.42
SOX3P41225 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX3P41225 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC17.68■□□□□ 0.42
SOX3P41225 C2orf69P3-201ENST00000565542 1120 ntBASIC17.68■□□□□ 0.42
SOX3P41225 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.68■□□□□ 0.42
SOX3P41225 AC145285.6-201ENST00000604632 637 ntBASIC17.68■□□□□ 0.42
SOX3P41225 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX3P41225 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC17.68■□□□□ 0.42
SOX3P41225 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX3P41225 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX3P41225 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.68■□□□□ 0.42
SOX3P41225 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
SOX3P41225 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.68■□□□□ 0.42
SOX3P41225 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
SOX3P41225 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SOX3P41225 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SOX3P41225 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX3P41225 SDHAP1-207ENST00000440850 2000 ntBASIC17.67■□□□□ 0.42
SOX3P41225 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX3P41225 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX3P41225 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SOX3P41225 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms