Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
CSB-PGBD3P0DP91 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC24.93■■□□□ 1.58
CSB-PGBD3P0DP91 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
CSB-PGBD3P0DP91 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 ENSA-205ENST00000361532 792 ntTSL 2 BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 TK1-205ENST00000590862 642 ntTSL 3 BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 AL390719.2-201ENST00000606993 987 ntBASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 AC006538.3-201ENST00000612495 578 ntBASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 AC004263.2-201ENST00000617183 678 ntBASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 AL512353.2-201ENST00000448759 1962 ntBASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 Z82202.1-201ENST00000623446 1880 ntBASIC24.92■■□□□ 1.58
CSB-PGBD3P0DP91 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC24.91■■□□□ 1.58
CSB-PGBD3P0DP91 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC24.91■■□□□ 1.58
CSB-PGBD3P0DP91 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
CSB-PGBD3P0DP91 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC24.91■■□□□ 1.58
CSB-PGBD3P0DP91 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
CSB-PGBD3P0DP91 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
CSB-PGBD3P0DP91 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
CSB-PGBD3P0DP91 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC24.91■■□□□ 1.58
CSB-PGBD3P0DP91 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC24.91■■□□□ 1.58
CSB-PGBD3P0DP91 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC24.91■■□□□ 1.58
CSB-PGBD3P0DP91 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC24.91■■□□□ 1.58
CSB-PGBD3P0DP91 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC24.91■■□□□ 1.58
CSB-PGBD3P0DP91 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC24.91■■□□□ 1.58
CSB-PGBD3P0DP91 CALM3-211ENST00000598871 561 ntTSL 4 BASIC24.91■■□□□ 1.58
CSB-PGBD3P0DP91 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
CSB-PGBD3P0DP91 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC24.91■■□□□ 1.58
CSB-PGBD3P0DP91 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
CSB-PGBD3P0DP91 AC233702.3-201ENST00000578656 1387 ntBASIC24.91■■□□□ 1.58
CSB-PGBD3P0DP91 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC24.91■■□□□ 1.58
CSB-PGBD3P0DP91 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC24.91■■□□□ 1.58
CSB-PGBD3P0DP91 AC112907.3-201ENST00000577781 2400 ntBASIC24.91■■□□□ 1.58
CSB-PGBD3P0DP91 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 KATNBL1P6-202ENST00000562413 1466 ntBASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 MRPL3P1-201ENST00000400109 1033 ntBASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 ELP6-205ENST00000439305 880 ntTSL 2 BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 KRT16P4-201ENST00000453883 522 ntBASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 AL121912.1-201ENST00000603683 238 ntBASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 AL353801.3-201ENST00000609898 542 ntBASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
CSB-PGBD3P0DP91 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC24.89■■□□□ 1.58
CSB-PGBD3P0DP91 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC24.89■■□□□ 1.58
CSB-PGBD3P0DP91 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
CSB-PGBD3P0DP91 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
CSB-PGBD3P0DP91 HOXB1-202ENST00000577092 1414 ntBASIC24.89■■□□□ 1.58
CSB-PGBD3P0DP91 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC24.89■■□□□ 1.58
CSB-PGBD3P0DP91 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
CSB-PGBD3P0DP91 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
CSB-PGBD3P0DP91 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC24.89■■□□□ 1.58
CSB-PGBD3P0DP91 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
CSB-PGBD3P0DP91 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC24.89■■□□□ 1.58
CSB-PGBD3P0DP91 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC24.89■■□□□ 1.58
CSB-PGBD3P0DP91 AC106795.1-205ENST00000512851 1056 ntBASIC24.89■■□□□ 1.58
CSB-PGBD3P0DP91 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC24.89■■□□□ 1.58
CSB-PGBD3P0DP91 AL662844.1-201ENST00000546340 181 ntBASIC24.89■■□□□ 1.58
CSB-PGBD3P0DP91 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC24.89■■□□□ 1.58
CSB-PGBD3P0DP91 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC24.89■■□□□ 1.58
CSB-PGBD3P0DP91 Z69720.1-201ENST00000601483 472 ntBASIC24.89■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms