Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
APOEP02649 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
APOEP02649 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.72■□□□□ 0.75
APOEP02649 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
APOEP02649 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
APOEP02649 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.72■□□□□ 0.75
APOEP02649 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
APOEP02649 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
APOEP02649 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
APOEP02649 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
APOEP02649 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
APOEP02649 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
APOEP02649 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.71■□□□□ 0.75
APOEP02649 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
APOEP02649 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.71■□□□□ 0.75
APOEP02649 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
APOEP02649 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
APOEP02649 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
APOEP02649 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.71■□□□□ 0.75
APOEP02649 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.71■□□□□ 0.75
APOEP02649 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.71■□□□□ 0.75
APOEP02649 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
APOEP02649 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.71■□□□□ 0.75
APOEP02649 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
APOEP02649 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.71■□□□□ 0.75
APOEP02649 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
APOEP02649 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.71■□□□□ 0.75
APOEP02649 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
APOEP02649 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
APOEP02649 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.71■□□□□ 0.75
APOEP02649 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
APOEP02649 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
APOEP02649 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.7■□□□□ 0.74
APOEP02649 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
APOEP02649 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.7■□□□□ 0.74
APOEP02649 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
APOEP02649 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
APOEP02649 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
APOEP02649 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
APOEP02649 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
APOEP02649 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
APOEP02649 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.7■□□□□ 0.74
APOEP02649 TSPY17P-201ENST00000450329 467 ntBASIC19.7■□□□□ 0.74
APOEP02649 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC19.7■□□□□ 0.74
APOEP02649 AC012306.2-201ENST00000609350 630 ntBASIC19.7■□□□□ 0.74
APOEP02649 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
APOEP02649 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
APOEP02649 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
APOEP02649 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.7■□□□□ 0.74
APOEP02649 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.7■□□□□ 0.74
APOEP02649 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
APOEP02649 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.7■□□□□ 0.74
APOEP02649 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
APOEP02649 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
APOEP02649 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
APOEP02649 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.7■□□□□ 0.74
APOEP02649 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
APOEP02649 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
APOEP02649 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.69■□□□□ 0.74
APOEP02649 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
APOEP02649 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
APOEP02649 IRX1P1-201ENST00000438849 1838 ntBASIC19.69■□□□□ 0.74
APOEP02649 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
APOEP02649 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
APOEP02649 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.69■□□□□ 0.74
APOEP02649 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
APOEP02649 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
APOEP02649 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.69■□□□□ 0.74
APOEP02649 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
APOEP02649 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
APOEP02649 FEM1AP3-201ENST00000403722 1741 ntBASIC19.69■□□□□ 0.74
APOEP02649 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
APOEP02649 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
APOEP02649 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
APOEP02649 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.69■□□□□ 0.74
APOEP02649 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.69■□□□□ 0.74
APOEP02649 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
APOEP02649 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
APOEP02649 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
APOEP02649 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
APOEP02649 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
APOEP02649 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.69■□□□□ 0.74
APOEP02649 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
APOEP02649 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
APOEP02649 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
APOEP02649 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
APOEP02649 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
APOEP02649 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
APOEP02649 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
APOEP02649 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
APOEP02649 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
APOEP02649 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
APOEP02649 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
APOEP02649 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC19.68■□□□□ 0.74
APOEP02649 FP475955.4-201ENST00000623131 1990 ntBASIC19.68■□□□□ 0.74
APOEP02649 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
APOEP02649 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
APOEP02649 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
APOEP02649 AC120498.9-201ENST00000339021 3867 ntBASIC19.68■□□□□ 0.74
APOEP02649 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms