Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC26.49■■□□□ 1.83
NPHP4O75161 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC26.49■■□□□ 1.83
NPHP4O75161 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC26.49■■□□□ 1.83
NPHP4O75161 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC26.49■■□□□ 1.83
NPHP4O75161 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
NPHP4O75161 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
NPHP4O75161 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
NPHP4O75161 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC26.49■■□□□ 1.83
NPHP4O75161 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC26.49■■□□□ 1.83
NPHP4O75161 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC26.49■■□□□ 1.83
NPHP4O75161 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
NPHP4O75161 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
NPHP4O75161 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
NPHP4O75161 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
NPHP4O75161 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
NPHP4O75161 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC26.48■■□□□ 1.83
NPHP4O75161 PAM16-208ENST00000573553 722 ntTSL 2 BASIC26.48■■□□□ 1.83
NPHP4O75161 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
NPHP4O75161 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
NPHP4O75161 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC26.48■■□□□ 1.83
NPHP4O75161 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
NPHP4O75161 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC26.48■■□□□ 1.83
NPHP4O75161 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
NPHP4O75161 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
NPHP4O75161 AC079834.2-201ENST00000609776 1949 ntBASIC26.48■■□□□ 1.83
NPHP4O75161 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
NPHP4O75161 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
NPHP4O75161 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
NPHP4O75161 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
NPHP4O75161 CCS-201ENST00000310190 942 ntTSL 5 BASIC26.48■■□□□ 1.83
NPHP4O75161 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
NPHP4O75161 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC26.48■■□□□ 1.83
NPHP4O75161 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC26.48■■□□□ 1.83
NPHP4O75161 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC26.48■■□□□ 1.83
NPHP4O75161 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
NPHP4O75161 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC26.48■■□□□ 1.83
NPHP4O75161 CFL1-212ENST00000531413 636 ntTSL 3 BASIC26.48■■□□□ 1.83
NPHP4O75161 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
NPHP4O75161 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
NPHP4O75161 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
NPHP4O75161 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC26.47■■□□□ 1.83
NPHP4O75161 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC26.47■■□□□ 1.83
NPHP4O75161 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
NPHP4O75161 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
NPHP4O75161 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
NPHP4O75161 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
NPHP4O75161 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
NPHP4O75161 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
NPHP4O75161 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
NPHP4O75161 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
NPHP4O75161 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
NPHP4O75161 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC26.47■■□□□ 1.83
NPHP4O75161 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
NPHP4O75161 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
NPHP4O75161 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
NPHP4O75161 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC26.47■■□□□ 1.83
NPHP4O75161 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
NPHP4O75161 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC26.47■■□□□ 1.83
NPHP4O75161 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC26.47■■□□□ 1.83
NPHP4O75161 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC26.47■■□□□ 1.83
NPHP4O75161 AC134684.3-201ENST00000641758 218 ntBASIC26.47■■□□□ 1.83
NPHP4O75161 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
NPHP4O75161 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC26.46■■□□□ 1.83
NPHP4O75161 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
NPHP4O75161 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
NPHP4O75161 PAN3-AS1-201ENST00000563843 1351 ntBASIC26.46■■□□□ 1.83
NPHP4O75161 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
NPHP4O75161 AC112482.1-201ENST00000492080 688 ntBASIC26.46■■□□□ 1.83
NPHP4O75161 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC26.46■■□□□ 1.83
NPHP4O75161 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC26.46■■□□□ 1.83
NPHP4O75161 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC26.46■■□□□ 1.83
NPHP4O75161 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC26.46■■□□□ 1.83
NPHP4O75161 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
NPHP4O75161 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC26.45■■□□□ 1.83
NPHP4O75161 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC26.45■■□□□ 1.83
NPHP4O75161 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC26.45■■□□□ 1.83
NPHP4O75161 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC26.45■■□□□ 1.83
NPHP4O75161 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
NPHP4O75161 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC26.45■■□□□ 1.83
NPHP4O75161 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
NPHP4O75161 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
NPHP4O75161 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
NPHP4O75161 DNAJB3-201ENST00000446806 729 ntBASIC26.45■■□□□ 1.82
NPHP4O75161 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC26.45■■□□□ 1.82
NPHP4O75161 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC26.45■■□□□ 1.82
NPHP4O75161 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
NPHP4O75161 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
NPHP4O75161 AP001269.4-201ENST00000609611 512 ntBASIC26.45■■□□□ 1.82
NPHP4O75161 AC083906.6-201ENST00000641366 219 ntBASIC26.45■■□□□ 1.82
NPHP4O75161 AC079781.4-201ENST00000641908 219 ntBASIC26.45■■□□□ 1.82
NPHP4O75161 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
NPHP4O75161 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC26.45■■□□□ 1.82
NPHP4O75161 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC26.45■■□□□ 1.82
NPHP4O75161 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
NPHP4O75161 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
NPHP4O75161 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC26.44■■□□□ 1.82
NPHP4O75161 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
NPHP4O75161 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
NPHP4O75161 DDT-203ENST00000403754 569 ntTSL 3 BASIC26.44■■□□□ 1.82
NPHP4O75161 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC26.44■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms