Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC11O43248 HLA-F-220ENST00000434407 884 ntBASIC19.17■□□□□ 0.66
HOXC11O43248 KRT18P48-201ENST00000434763 852 ntBASIC19.17■□□□□ 0.66
HOXC11O43248 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
HOXC11O43248 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.17■□□□□ 0.66
HOXC11O43248 AC079602.3-201ENST00000623931 403 ntBASIC19.17■□□□□ 0.66
HOXC11O43248 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.17■□□□□ 0.66
HOXC11O43248 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC11O43248 PCDHAC2-203ENST00000615316 3011 ntBASIC19.17■□□□□ 0.66
HOXC11O43248 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC11O43248 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
HOXC11O43248 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.17■□□□□ 0.66
HOXC11O43248 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC11O43248 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.17■□□□□ 0.66
HOXC11O43248 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC11O43248 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.17■□□□□ 0.66
HOXC11O43248 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXC11O43248 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC11O43248 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC11O43248 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC11O43248 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.16■□□□□ 0.66
HOXC11O43248 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC11O43248 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC11O43248 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.16■□□□□ 0.66
HOXC11O43248 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.16■□□□□ 0.66
HOXC11O43248 KRT18P23-201ENST00000435622 1283 ntBASIC19.16■□□□□ 0.66
HOXC11O43248 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.16■□□□□ 0.66
HOXC11O43248 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.16■□□□□ 0.66
HOXC11O43248 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.16■□□□□ 0.66
HOXC11O43248 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.16■□□□□ 0.66
HOXC11O43248 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
HOXC11O43248 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.16■□□□□ 0.66
HOXC11O43248 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.16■□□□□ 0.66
HOXC11O43248 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.16■□□□□ 0.66
HOXC11O43248 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.16■□□□□ 0.66
HOXC11O43248 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC11O43248 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC11O43248 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.16■□□□□ 0.66
HOXC11O43248 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC11O43248 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC11O43248 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC11O43248 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC11O43248 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HOXC11O43248 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC11O43248 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.15■□□□□ 0.66
HOXC11O43248 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.15■□□□□ 0.66
HOXC11O43248 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC11O43248 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC11O43248 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC11O43248 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC11O43248 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC11O43248 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
HOXC11O43248 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.15■□□□□ 0.66
HOXC11O43248 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC11O43248 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
HOXC11O43248 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC11O43248 AC104390.1-201ENST00000555663 520 ntBASIC19.15■□□□□ 0.66
HOXC11O43248 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
HOXC11O43248 AL136038.4-201ENST00000603606 1261 ntBASIC19.15■□□□□ 0.66
HOXC11O43248 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
HOXC11O43248 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
HOXC11O43248 AL158211.5-201ENST00000623583 2518 ntBASIC19.15■□□□□ 0.66
HOXC11O43248 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
HOXC11O43248 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC11O43248 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC19.15■□□□□ 0.66
HOXC11O43248 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HOXC11O43248 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.15■□□□□ 0.66
HOXC11O43248 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
HOXC11O43248 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
HOXC11O43248 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.14■□□□□ 0.66
HOXC11O43248 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
HOXC11O43248 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC11O43248 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.14■□□□□ 0.65
HOXC11O43248 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC11O43248 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.14■□□□□ 0.65
HOXC11O43248 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC11O43248 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.14■□□□□ 0.65
HOXC11O43248 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.14■□□□□ 0.65
HOXC11O43248 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.14■□□□□ 0.65
HOXC11O43248 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.14■□□□□ 0.65
HOXC11O43248 KRT126P-201ENST00000549467 1181 ntBASIC19.14■□□□□ 0.65
HOXC11O43248 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.14■□□□□ 0.65
HOXC11O43248 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.14■□□□□ 0.65
HOXC11O43248 AC011498.5-201ENST00000592027 486 ntBASIC19.14■□□□□ 0.65
HOXC11O43248 AC010240.3-201ENST00000607688 395 ntBASIC19.14■□□□□ 0.65
HOXC11O43248 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC11O43248 NPAP1P7-201ENST00000613027 823 ntBASIC19.14■□□□□ 0.65
HOXC11O43248 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC11O43248 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.14■□□□□ 0.65
HOXC11O43248 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
HOXC11O43248 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC11O43248 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC11O43248 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HOXC11O43248 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.14■□□□□ 0.65
HOXC11O43248 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
HOXC11O43248 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.13■□□□□ 0.65
HOXC11O43248 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
HOXC11O43248 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HOXC11O43248 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.13■□□□□ 0.65
HOXC11O43248 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms