Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CHD1O14646 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC30.47■■■□□ 2.47
CHD1O14646 SDHAP1-207ENST00000440850 2000 ntBASIC30.47■■■□□ 2.47
CHD1O14646 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC30.47■■■□□ 2.47
CHD1O14646 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC30.47■■■□□ 2.47
CHD1O14646 AC083906.6-201ENST00000641366 219 ntBASIC30.47■■■□□ 2.47
CHD1O14646 AC079781.4-201ENST00000641908 219 ntBASIC30.47■■■□□ 2.47
CHD1O14646 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC30.47■■■□□ 2.47
CHD1O14646 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
CHD1O14646 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
CHD1O14646 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC30.46■■■□□ 2.47
CHD1O14646 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC30.46■■■□□ 2.47
CHD1O14646 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC30.46■■■□□ 2.47
CHD1O14646 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC30.46■■■□□ 2.47
CHD1O14646 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
CHD1O14646 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC30.46■■■□□ 2.47
CHD1O14646 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
CHD1O14646 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC30.45■■■□□ 2.47
CHD1O14646 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
CHD1O14646 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC30.45■■■□□ 2.47
CHD1O14646 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
CHD1O14646 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC30.45■■■□□ 2.47
CHD1O14646 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC30.45■■■□□ 2.47
CHD1O14646 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC30.45■■■□□ 2.47
CHD1O14646 AC239800.4-201ENST00000603712 296 ntBASIC30.45■■■□□ 2.47
CHD1O14646 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC30.45■■■□□ 2.47
CHD1O14646 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
CHD1O14646 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC30.45■■■□□ 2.47
CHD1O14646 AL109659.2-201ENST00000606809 1674 ntBASIC30.45■■■□□ 2.46
CHD1O14646 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.46
CHD1O14646 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC30.44■■■□□ 2.46
CHD1O14646 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CHD1O14646 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC30.44■■■□□ 2.46
CHD1O14646 AC211486.1-202ENST00000416371 468 ntBASIC30.44■■■□□ 2.46
CHD1O14646 AC211476.1-201ENST00000503899 468 ntBASIC30.44■■■□□ 2.46
CHD1O14646 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC30.44■■■□□ 2.46
CHD1O14646 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC30.44■■■□□ 2.46
CHD1O14646 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
CHD1O14646 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC30.44■■■□□ 2.46
CHD1O14646 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC30.44■■■□□ 2.46
CHD1O14646 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC30.44■■■□□ 2.46
CHD1O14646 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CHD1O14646 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
CHD1O14646 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC30.44■■■□□ 2.46
CHD1O14646 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC30.44■■■□□ 2.46
CHD1O14646 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC30.44■■■□□ 2.46
CHD1O14646 FAM8A3P-201ENST00000427218 844 ntBASIC30.44■■■□□ 2.46
CHD1O14646 AC132008.2-207ENST00000454517 770 ntBASIC30.44■■■□□ 2.46
CHD1O14646 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
CHD1O14646 RNA5SP416-201ENST00000516838 111 ntBASIC30.44■■■□□ 2.46
CHD1O14646 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC30.44■■■□□ 2.46
CHD1O14646 AC008735.5-201ENST00000623544 497 ntBASIC30.44■■■□□ 2.46
CHD1O14646 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC30.44■■■□□ 2.46
CHD1O14646 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC30.43■■■□□ 2.46
CHD1O14646 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CHD1O14646 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CHD1O14646 AL691432.2-201ENST00000607222 2038 ntBASIC30.43■■■□□ 2.46
CHD1O14646 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC30.43■■■□□ 2.46
CHD1O14646 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CHD1O14646 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
CHD1O14646 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC30.43■■■□□ 2.46
CHD1O14646 OR7E14P-202ENST00000530490 1290 ntBASIC30.43■■■□□ 2.46
CHD1O14646 SPCS2P1-201ENST00000561636 679 ntBASIC30.43■■■□□ 2.46
CHD1O14646 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC30.43■■■□□ 2.46
CHD1O14646 PNMT-203ENST00000581428 677 ntTSL 2 BASIC30.43■■■□□ 2.46
CHD1O14646 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
CHD1O14646 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC30.43■■■□□ 2.46
CHD1O14646 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC30.43■■■□□ 2.46
CHD1O14646 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC30.43■■■□□ 2.46
CHD1O14646 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CHD1O14646 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC30.42■■■□□ 2.46
CHD1O14646 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CHD1O14646 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
CHD1O14646 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CHD1O14646 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC30.42■■■□□ 2.46
CHD1O14646 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC30.42■■■□□ 2.46
CHD1O14646 HLA-J-203ENST00000494367 1087 ntBASIC30.42■■■□□ 2.46
CHD1O14646 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC30.42■■■□□ 2.46
CHD1O14646 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC30.42■■■□□ 2.46
CHD1O14646 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC30.42■■■□□ 2.46
CHD1O14646 ORC5-208ENST00000626700 344 ntTSL 3 BASIC30.42■■■□□ 2.46
CHD1O14646 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
CHD1O14646 AC008556.1-201ENST00000610908 2040 ntBASIC30.42■■■□□ 2.46
CHD1O14646 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
CHD1O14646 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CHD1O14646 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CHD1O14646 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
CHD1O14646 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CHD1O14646 PNMT-202ENST00000394246 821 ntTSL 2 BASIC30.42■■■□□ 2.46
CHD1O14646 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC30.42■■■□□ 2.46
CHD1O14646 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC30.42■■■□□ 2.46
CHD1O14646 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
CHD1O14646 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC30.42■■■□□ 2.46
CHD1O14646 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CHD1O14646 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CHD1O14646 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
CHD1O14646 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC30.41■■■□□ 2.46
CHD1O14646 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CHD1O14646 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC30.41■■■□□ 2.46
CHD1O14646 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC30.41■■■□□ 2.46
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms