Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.53■□□□□ 0.4
HMGN4O00479 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGN4O00479 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
HMGN4O00479 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.53■□□□□ 0.4
HMGN4O00479 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGN4O00479 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGN4O00479 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.53■□□□□ 0.4
HMGN4O00479 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.53■□□□□ 0.4
HMGN4O00479 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGN4O00479 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
HMGN4O00479 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.53■□□□□ 0.4
HMGN4O00479 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.53■□□□□ 0.4
HMGN4O00479 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HMGN4O00479 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.53■□□□□ 0.4
HMGN4O00479 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
HMGN4O00479 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
HMGN4O00479 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGN4O00479 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
HMGN4O00479 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC17.52■□□□□ 0.4
HMGN4O00479 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGN4O00479 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HMGN4O00479 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGN4O00479 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGN4O00479 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HMGN4O00479 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HMGN4O00479 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
HMGN4O00479 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.52■□□□□ 0.4
HMGN4O00479 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.52■□□□□ 0.4
HMGN4O00479 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.52■□□□□ 0.4
HMGN4O00479 FAM201B-201ENST00000458407 597 ntBASIC17.52■□□□□ 0.4
HMGN4O00479 AC011506.1-201ENST00000474329 610 ntBASIC17.52■□□□□ 0.4
HMGN4O00479 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HMGN4O00479 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
HMGN4O00479 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.52■□□□□ 0.4
HMGN4O00479 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.52■□□□□ 0.4
HMGN4O00479 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.52■□□□□ 0.4
HMGN4O00479 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HMGN4O00479 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HMGN4O00479 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HMGN4O00479 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
HMGN4O00479 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HMGN4O00479 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.52■□□□□ 0.39
HMGN4O00479 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
HMGN4O00479 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.52■□□□□ 0.39
HMGN4O00479 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.39
HMGN4O00479 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HMGN4O00479 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.52■□□□□ 0.39
HMGN4O00479 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.39
HMGN4O00479 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HMGN4O00479 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HMGN4O00479 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HMGN4O00479 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.51■□□□□ 0.39
HMGN4O00479 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
HMGN4O00479 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
HMGN4O00479 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGN4O00479 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGN4O00479 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGN4O00479 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGN4O00479 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.51■□□□□ 0.39
HMGN4O00479 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGN4O00479 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGN4O00479 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGN4O00479 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.51■□□□□ 0.39
HMGN4O00479 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGN4O00479 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
HMGN4O00479 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGN4O00479 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGN4O00479 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGN4O00479 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
HMGN4O00479 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGN4O00479 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGN4O00479 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.51■□□□□ 0.39
HMGN4O00479 FAM207BP-201ENST00000447172 505 ntBASIC17.51■□□□□ 0.39
HMGN4O00479 TSPY20P-201ENST00000450910 630 ntBASIC17.51■□□□□ 0.39
HMGN4O00479 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGN4O00479 B3GAT3P1-201ENST00000471720 806 ntBASIC17.51■□□□□ 0.39
HMGN4O00479 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGN4O00479 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.51■□□□□ 0.39
HMGN4O00479 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
HMGN4O00479 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.51■□□□□ 0.39
HMGN4O00479 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGN4O00479 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.51■□□□□ 0.39
HMGN4O00479 MIR6786-201ENST00000616843 113 ntBASIC17.51■□□□□ 0.39
HMGN4O00479 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HMGN4O00479 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.51■□□□□ 0.39
HMGN4O00479 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGN4O00479 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.51■□□□□ 0.39
HMGN4O00479 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
HMGN4O00479 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
HMGN4O00479 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.51■□□□□ 0.39
HMGN4O00479 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
HMGN4O00479 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HMGN4O00479 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
HMGN4O00479 AC079598.2-202ENST00000546624 1451 ntBASIC17.5■□□□□ 0.39
HMGN4O00479 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
HMGN4O00479 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
HMGN4O00479 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGN4O00479 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HMGN4O00479 AL354751.1-201ENST00000412768 1863 ntBASIC17.5■□□□□ 0.39
HMGN4O00479 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms