Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC28.55■■■□□ 2.16
COL17A1Q9UMD9 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
COL17A1Q9UMD9 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC28.55■■■□□ 2.16
COL17A1Q9UMD9 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC28.55■■■□□ 2.16
COL17A1Q9UMD9 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC28.55■■■□□ 2.16
COL17A1Q9UMD9 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
COL17A1Q9UMD9 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
COL17A1Q9UMD9 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC28.55■■■□□ 2.16
COL17A1Q9UMD9 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
COL17A1Q9UMD9 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC28.55■■■□□ 2.16
COL17A1Q9UMD9 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC28.54■■■□□ 2.16
COL17A1Q9UMD9 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
COL17A1Q9UMD9 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC28.54■■■□□ 2.16
COL17A1Q9UMD9 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
COL17A1Q9UMD9 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC28.54■■■□□ 2.16
COL17A1Q9UMD9 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC28.54■■■□□ 2.16
COL17A1Q9UMD9 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC28.54■■■□□ 2.16
COL17A1Q9UMD9 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC28.54■■■□□ 2.16
COL17A1Q9UMD9 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC28.54■■■□□ 2.16
COL17A1Q9UMD9 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
COL17A1Q9UMD9 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC28.53■■■□□ 2.16
COL17A1Q9UMD9 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
COL17A1Q9UMD9 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC28.53■■■□□ 2.16
COL17A1Q9UMD9 AL591424.1-201ENST00000442569 1213 ntBASIC28.53■■■□□ 2.16
COL17A1Q9UMD9 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC28.53■■■□□ 2.16
COL17A1Q9UMD9 AC114341.1-201ENST00000618070 349 ntBASIC28.53■■■□□ 2.16
COL17A1Q9UMD9 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC28.53■■■□□ 2.16
COL17A1Q9UMD9 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
COL17A1Q9UMD9 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
COL17A1Q9UMD9 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
COL17A1Q9UMD9 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC28.53■■■□□ 2.16
COL17A1Q9UMD9 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC28.53■■■□□ 2.16
COL17A1Q9UMD9 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
COL17A1Q9UMD9 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
COL17A1Q9UMD9 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
COL17A1Q9UMD9 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
COL17A1Q9UMD9 VENTXP7-201ENST00000475503 772 ntBASIC28.53■■■□□ 2.16
COL17A1Q9UMD9 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
COL17A1Q9UMD9 AC083906.6-201ENST00000641366 219 ntBASIC28.53■■■□□ 2.16
COL17A1Q9UMD9 AC079781.4-201ENST00000641908 219 ntBASIC28.53■■■□□ 2.16
COL17A1Q9UMD9 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC28.52■■■□□ 2.16
COL17A1Q9UMD9 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
COL17A1Q9UMD9 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC28.52■■■□□ 2.16
COL17A1Q9UMD9 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC28.52■■■□□ 2.16
COL17A1Q9UMD9 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
COL17A1Q9UMD9 METTL21AP1-201ENST00000438852 635 ntBASIC28.52■■■□□ 2.16
COL17A1Q9UMD9 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC28.52■■■□□ 2.16
COL17A1Q9UMD9 AP006288.1-201ENST00000446065 395 ntBASIC28.52■■■□□ 2.16
COL17A1Q9UMD9 AC132008.2-207ENST00000454517 770 ntBASIC28.52■■■□□ 2.16
COL17A1Q9UMD9 MINOS1P3-201ENST00000457048 203 ntBASIC28.52■■■□□ 2.16
COL17A1Q9UMD9 HLA-J-202ENST00000469281 1241 ntBASIC28.52■■■□□ 2.16
COL17A1Q9UMD9 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC28.52■■■□□ 2.16
COL17A1Q9UMD9 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC28.52■■■□□ 2.16
COL17A1Q9UMD9 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC28.51■■■□□ 2.16
COL17A1Q9UMD9 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC28.51■■■□□ 2.15
COL17A1Q9UMD9 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
COL17A1Q9UMD9 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC28.51■■■□□ 2.15
COL17A1Q9UMD9 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
COL17A1Q9UMD9 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC28.51■■■□□ 2.15
COL17A1Q9UMD9 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC28.51■■■□□ 2.15
COL17A1Q9UMD9 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC28.51■■■□□ 2.15
COL17A1Q9UMD9 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC28.51■■■□□ 2.15
COL17A1Q9UMD9 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC28.51■■■□□ 2.15
COL17A1Q9UMD9 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC28.51■■■□□ 2.15
COL17A1Q9UMD9 GUSBP12-201ENST00000513727 720 ntBASIC28.51■■■□□ 2.15
COL17A1Q9UMD9 AC104390.1-201ENST00000555663 520 ntBASIC28.51■■■□□ 2.15
COL17A1Q9UMD9 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC28.51■■■□□ 2.15
COL17A1Q9UMD9 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC28.51■■■□□ 2.15
COL17A1Q9UMD9 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
COL17A1Q9UMD9 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
COL17A1Q9UMD9 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC28.51■■■□□ 2.15
COL17A1Q9UMD9 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
COL17A1Q9UMD9 TREX1-205ENST00000625293 1783 ntBASIC28.51■■■□□ 2.15
COL17A1Q9UMD9 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
COL17A1Q9UMD9 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC28.5■■■□□ 2.15
COL17A1Q9UMD9 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC28.5■■■□□ 2.15
COL17A1Q9UMD9 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC28.5■■■□□ 2.15
COL17A1Q9UMD9 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC28.5■■■□□ 2.15
COL17A1Q9UMD9 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC28.5■■■□□ 2.15
COL17A1Q9UMD9 HIST2H3DP1-201ENST00000401004 416 ntBASIC28.5■■■□□ 2.15
COL17A1Q9UMD9 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC28.5■■■□□ 2.15
COL17A1Q9UMD9 AC239800.4-201ENST00000603712 296 ntBASIC28.5■■■□□ 2.15
COL17A1Q9UMD9 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC28.5■■■□□ 2.15
COL17A1Q9UMD9 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
COL17A1Q9UMD9 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
COL17A1Q9UMD9 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC28.5■■■□□ 2.15
COL17A1Q9UMD9 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
COL17A1Q9UMD9 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
COL17A1Q9UMD9 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC28.5■■■□□ 2.15
COL17A1Q9UMD9 KRT18P28-201ENST00000453838 1332 ntBASIC28.5■■■□□ 2.15
COL17A1Q9UMD9 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
COL17A1Q9UMD9 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC28.5■■■□□ 2.15
COL17A1Q9UMD9 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC28.5■■■□□ 2.15
COL17A1Q9UMD9 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC28.5■■■□□ 2.15
COL17A1Q9UMD9 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
COL17A1Q9UMD9 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
COL17A1Q9UMD9 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC28.49■■■□□ 2.15
COL17A1Q9UMD9 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
COL17A1Q9UMD9 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC28.49■■■□□ 2.15
COL17A1Q9UMD9 AC004832.2-201ENST00000426397 482 ntBASIC28.49■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms