Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.85■□□□□ 0.45
SCN3AQ9NY46 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.85■□□□□ 0.45
SCN3AQ9NY46 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.85■□□□□ 0.45
SCN3AQ9NY46 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
SCN3AQ9NY46 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SCN3AQ9NY46 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SCN3AQ9NY46 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.85■□□□□ 0.45
SCN3AQ9NY46 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 AC116562.4-202ENST00000641738 218 ntBASIC17.84■□□□□ 0.45
SCN3AQ9NY46 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 KRT8P3-201ENST00000519669 1449 ntBASIC17.84■□□□□ 0.45
SCN3AQ9NY46 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.84■□□□□ 0.45
SCN3AQ9NY46 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SCN3AQ9NY46 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
SCN3AQ9NY46 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SCN3AQ9NY46 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SCN3AQ9NY46 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SCN3AQ9NY46 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.83■□□□□ 0.45
SCN3AQ9NY46 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
SCN3AQ9NY46 AC004408.2-201ENST00000623613 2777 ntBASIC17.83■□□□□ 0.45
SCN3AQ9NY46 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.83■□□□□ 0.45
SCN3AQ9NY46 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
SCN3AQ9NY46 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.83■□□□□ 0.45
SCN3AQ9NY46 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.83■□□□□ 0.45
SCN3AQ9NY46 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.83■□□□□ 0.45
SCN3AQ9NY46 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
SCN3AQ9NY46 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
SCN3AQ9NY46 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
SCN3AQ9NY46 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SCN3AQ9NY46 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SCN3AQ9NY46 AC073508.3-201ENST00000619697 1419 ntBASIC17.83■□□□□ 0.44
SCN3AQ9NY46 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SCN3AQ9NY46 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
SCN3AQ9NY46 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.83■□□□□ 0.44
SCN3AQ9NY46 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
SCN3AQ9NY46 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
SCN3AQ9NY46 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.44
SCN3AQ9NY46 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
SCN3AQ9NY46 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
SCN3AQ9NY46 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 TERF1P1-201ENST00000311003 1181 ntBASIC17.82■□□□□ 0.44
SCN3AQ9NY46 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 EGLN1P1-201ENST00000531623 762 ntBASIC17.82■□□□□ 0.44
SCN3AQ9NY46 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 TNXA-203ENST00000507684 2038 ntBASIC17.82■□□□□ 0.44
SCN3AQ9NY46 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 AL359075.1-203ENST00000462729 1002 ntBASIC17.82■□□□□ 0.44
SCN3AQ9NY46 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 KRT18P21-201ENST00000515767 1272 ntBASIC17.82■□□□□ 0.44
SCN3AQ9NY46 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 AC092865.7-201ENST00000641832 219 ntBASIC17.82■□□□□ 0.44
SCN3AQ9NY46 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.82■□□□□ 0.44
SCN3AQ9NY46 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
SCN3AQ9NY46 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.81■□□□□ 0.44
SCN3AQ9NY46 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms