Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CISHQ9NSE2 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CISHQ9NSE2 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CISHQ9NSE2 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CISHQ9NSE2 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.1■□□□□ 0.81
CISHQ9NSE2 AL023284.2-201ENST00000405850 579 ntBASIC20.1■□□□□ 0.81
CISHQ9NSE2 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.1■□□□□ 0.81
CISHQ9NSE2 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.1■□□□□ 0.81
CISHQ9NSE2 RPS20-210ENST00000523936 899 ntTSL 2 BASIC20.1■□□□□ 0.81
CISHQ9NSE2 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.1■□□□□ 0.81
CISHQ9NSE2 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CISHQ9NSE2 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.1■□□□□ 0.81
CISHQ9NSE2 MIR4674-201ENST00000582457 87 ntBASIC20.1■□□□□ 0.81
CISHQ9NSE2 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CISHQ9NSE2 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CISHQ9NSE2 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CISHQ9NSE2 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC20.1■□□□□ 0.81
CISHQ9NSE2 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CISHQ9NSE2 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CISHQ9NSE2 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.1■□□□□ 0.81
CISHQ9NSE2 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CISHQ9NSE2 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CISHQ9NSE2 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CISHQ9NSE2 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
CISHQ9NSE2 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
CISHQ9NSE2 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CISHQ9NSE2 AC004408.2-201ENST00000623613 2777 ntBASIC20.09■□□□□ 0.81
CISHQ9NSE2 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CISHQ9NSE2 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.09■□□□□ 0.81
CISHQ9NSE2 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CISHQ9NSE2 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.09■□□□□ 0.81
CISHQ9NSE2 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CISHQ9NSE2 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC20.09■□□□□ 0.81
CISHQ9NSE2 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.09■□□□□ 0.81
CISHQ9NSE2 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CISHQ9NSE2 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.09■□□□□ 0.81
CISHQ9NSE2 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CISHQ9NSE2 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.09■□□□□ 0.81
CISHQ9NSE2 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC20.09■□□□□ 0.81
CISHQ9NSE2 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.09■□□□□ 0.81
CISHQ9NSE2 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CISHQ9NSE2 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CISHQ9NSE2 LINC01568-207ENST00000641790 1380 ntBASIC20.08■□□□□ 0.81
CISHQ9NSE2 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.08■□□□□ 0.81
CISHQ9NSE2 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CISHQ9NSE2 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
CISHQ9NSE2 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.08■□□□□ 0.81
CISHQ9NSE2 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC20.08■□□□□ 0.81
CISHQ9NSE2 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
CISHQ9NSE2 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CISHQ9NSE2 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CISHQ9NSE2 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CISHQ9NSE2 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
CISHQ9NSE2 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.08■□□□□ 0.81
CISHQ9NSE2 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CISHQ9NSE2 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CISHQ9NSE2 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
CISHQ9NSE2 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.08■□□□□ 0.81
CISHQ9NSE2 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.08■□□□□ 0.81
CISHQ9NSE2 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.08■□□□□ 0.81
CISHQ9NSE2 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
CISHQ9NSE2 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
CISHQ9NSE2 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CISHQ9NSE2 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
CISHQ9NSE2 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
CISHQ9NSE2 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
CISHQ9NSE2 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.08■□□□□ 0.8
CISHQ9NSE2 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC20.08■□□□□ 0.8
CISHQ9NSE2 AC093525.10-201ENST00000625130 1569 ntBASIC20.08■□□□□ 0.8
CISHQ9NSE2 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20.08■□□□□ 0.8
CISHQ9NSE2 MTMR9LP-203ENST00000426597 1545 ntBASIC20.07■□□□□ 0.8
CISHQ9NSE2 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.07■□□□□ 0.8
CISHQ9NSE2 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CISHQ9NSE2 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
CISHQ9NSE2 AL109659.2-201ENST00000606809 1674 ntBASIC20.07■□□□□ 0.8
CISHQ9NSE2 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CISHQ9NSE2 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CISHQ9NSE2 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CISHQ9NSE2 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CISHQ9NSE2 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.07■□□□□ 0.8
CISHQ9NSE2 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.07■□□□□ 0.8
CISHQ9NSE2 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.07■□□□□ 0.8
CISHQ9NSE2 ECEL1P2-202ENST00000465689 757 ntBASIC20.07■□□□□ 0.8
CISHQ9NSE2 AC128688.1-201ENST00000487626 519 ntBASIC20.07■□□□□ 0.8
CISHQ9NSE2 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CISHQ9NSE2 AC010653.2-201ENST00000623505 997 ntBASIC20.07■□□□□ 0.8
CISHQ9NSE2 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.07■□□□□ 0.8
CISHQ9NSE2 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CISHQ9NSE2 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC20.07■□□□□ 0.8
CISHQ9NSE2 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CISHQ9NSE2 AC008556.1-201ENST00000610908 2040 ntBASIC20.07■□□□□ 0.8
CISHQ9NSE2 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.06■□□□□ 0.8
CISHQ9NSE2 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.06■□□□□ 0.8
CISHQ9NSE2 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CISHQ9NSE2 AL031598.1-201ENST00000561511 1773 ntBASIC20.06■□□□□ 0.8
CISHQ9NSE2 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC20.06■□□□□ 0.8
CISHQ9NSE2 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CISHQ9NSE2 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CISHQ9NSE2 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CISHQ9NSE2 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms