Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HPS3Q969F9 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.9■□□□□ 0.94
HPS3Q969F9 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.9■□□□□ 0.94
HPS3Q969F9 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.9■□□□□ 0.94
HPS3Q969F9 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.9■□□□□ 0.94
HPS3Q969F9 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.9■□□□□ 0.94
HPS3Q969F9 AC008622.2-201ENST00000617006 1229 ntBASIC20.9■□□□□ 0.94
HPS3Q969F9 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HPS3Q969F9 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
HPS3Q969F9 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
HPS3Q969F9 AL499627.1-201ENST00000569373 2188 ntBASIC20.9■□□□□ 0.94
HPS3Q969F9 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
HPS3Q969F9 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HPS3Q969F9 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
HPS3Q969F9 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HPS3Q969F9 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
HPS3Q969F9 ANO7L1-203ENST00000602586 1720 ntBASIC20.9■□□□□ 0.94
HPS3Q969F9 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
HPS3Q969F9 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
HPS3Q969F9 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC20.89■□□□□ 0.94
HPS3Q969F9 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HPS3Q969F9 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC20.89■□□□□ 0.94
HPS3Q969F9 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
HPS3Q969F9 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.89■□□□□ 0.94
HPS3Q969F9 AC096733.2-201ENST00000609937 1394 ntBASIC20.89■□□□□ 0.93
HPS3Q969F9 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
HPS3Q969F9 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HPS3Q969F9 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.89■□□□□ 0.93
HPS3Q969F9 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.89■□□□□ 0.93
HPS3Q969F9 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.89■□□□□ 0.93
HPS3Q969F9 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
HPS3Q969F9 AP006294.2-201ENST00000641667 209 ntBASIC20.89■□□□□ 0.93
HPS3Q969F9 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.89■□□□□ 0.93
HPS3Q969F9 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20.89■□□□□ 0.93
HPS3Q969F9 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HPS3Q969F9 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HPS3Q969F9 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.89■□□□□ 0.93
HPS3Q969F9 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HPS3Q969F9 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HPS3Q969F9 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HPS3Q969F9 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HPS3Q969F9 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.89■□□□□ 0.93
HPS3Q969F9 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
HPS3Q969F9 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HPS3Q969F9 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HPS3Q969F9 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HPS3Q969F9 MTMR9LP-203ENST00000426597 1545 ntBASIC20.88■□□□□ 0.93
HPS3Q969F9 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HPS3Q969F9 AC079598.2-202ENST00000546624 1451 ntBASIC20.88■□□□□ 0.93
HPS3Q969F9 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC20.88■□□□□ 0.93
HPS3Q969F9 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HPS3Q969F9 COBL-210ENST00000632460 1941 ntTSL 5 BASIC20.88■□□□□ 0.93
HPS3Q969F9 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HPS3Q969F9 KRT8P3-201ENST00000519669 1449 ntBASIC20.88■□□□□ 0.93
HPS3Q969F9 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.88■□□□□ 0.93
HPS3Q969F9 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
HPS3Q969F9 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.88■□□□□ 0.93
HPS3Q969F9 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HPS3Q969F9 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
HPS3Q969F9 Z98044.1-201ENST00000632503 1764 ntBASIC20.88■□□□□ 0.93
HPS3Q969F9 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HPS3Q969F9 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HPS3Q969F9 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HPS3Q969F9 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HPS3Q969F9 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
HPS3Q969F9 MIR718-201ENST00000390190 70 ntBASIC20.88■□□□□ 0.93
HPS3Q969F9 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.88■□□□□ 0.93
HPS3Q969F9 CRYGFP-201ENST00000418459 633 ntBASIC20.88■□□□□ 0.93
HPS3Q969F9 AL390955.1-201ENST00000428694 934 ntBASIC20.88■□□□□ 0.93
HPS3Q969F9 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HPS3Q969F9 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.88■□□□□ 0.93
HPS3Q969F9 RBM17P1-201ENST00000453646 1190 ntBASIC20.88■□□□□ 0.93
HPS3Q969F9 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.88■□□□□ 0.93
HPS3Q969F9 AL355075.4-201ENST00000554988 638 ntBASIC20.88■□□□□ 0.93
HPS3Q969F9 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC20.88■□□□□ 0.93
HPS3Q969F9 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.88■□□□□ 0.93
HPS3Q969F9 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.88■□□□□ 0.93
HPS3Q969F9 HEIH-201ENST00000623091 1652 ntBASIC20.88■□□□□ 0.93
HPS3Q969F9 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.88■□□□□ 0.93
HPS3Q969F9 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
HPS3Q969F9 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC20.87■□□□□ 0.93
HPS3Q969F9 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HPS3Q969F9 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
HPS3Q969F9 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HPS3Q969F9 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC20.87■□□□□ 0.93
HPS3Q969F9 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.87■□□□□ 0.93
HPS3Q969F9 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HPS3Q969F9 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
HPS3Q969F9 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HPS3Q969F9 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
HPS3Q969F9 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.87■□□□□ 0.93
HPS3Q969F9 AP000525.1-201ENST00000608286 694 ntBASIC20.87■□□□□ 0.93
HPS3Q969F9 AC066615.1-201ENST00000640911 628 ntBASIC20.87■□□□□ 0.93
HPS3Q969F9 AC068587.9-201ENST00000641814 219 ntBASIC20.87■□□□□ 0.93
HPS3Q969F9 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
HPS3Q969F9 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HPS3Q969F9 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HPS3Q969F9 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
HPS3Q969F9 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC20.87■□□□□ 0.93
HPS3Q969F9 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms