Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 AL138781.2-201ENST00000617896 1843 ntBASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 CRYGFP-201ENST00000418459 633 ntBASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 KRT8P32-201ENST00000512863 1461 ntBASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 HEIH-201ENST00000623091 1652 ntBASIC20.93■□□□□ 0.94
CCDC65Q8IXS2 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC20.92■□□□□ 0.94
CCDC65Q8IXS2 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC20.92■□□□□ 0.94
CCDC65Q8IXS2 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
CCDC65Q8IXS2 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC65Q8IXS2 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC20.92■□□□□ 0.94
CCDC65Q8IXS2 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.92■□□□□ 0.94
CCDC65Q8IXS2 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC65Q8IXS2 UNC93B2-201ENST00000285383 730 ntBASIC20.92■□□□□ 0.94
CCDC65Q8IXS2 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC65Q8IXS2 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.92■□□□□ 0.94
CCDC65Q8IXS2 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC65Q8IXS2 KRT17P2-201ENST00000300992 1314 ntBASIC20.92■□□□□ 0.94
CCDC65Q8IXS2 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC65Q8IXS2 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC65Q8IXS2 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CCDC65Q8IXS2 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CCDC65Q8IXS2 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 RBM17P1-201ENST00000453646 1190 ntBASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 AC068587.9-201ENST00000641814 219 ntBASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CCDC65Q8IXS2 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 AP005242.2-201ENST00000580065 1175 ntBASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
CCDC65Q8IXS2 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms