Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 ABHD17AP1-201ENST00000358206 933 ntBASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 PHGDH-210ENST00000641115 1638 ntBASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.07■□□□□ 0.48
PPP4R4Q6NUP7 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 KRT18P29-201ENST00000397031 1267 ntBASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 POU5F1P3-201ENST00000428824 1078 ntBASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 AP003097.1-201ENST00000530657 1135 ntBASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 AC067852.2-201ENST00000590513 2313 ntBASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
PPP4R4Q6NUP7 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 UNC93B5-201ENST00000530315 699 ntBASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 AC006058.3-201ENST00000606217 1069 ntBASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.05■□□□□ 0.48
PPP4R4Q6NUP7 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms