Protein–RNA interactions for Protein: Q12766

HMGXB3, HMG domain-containing protein 3, humanhuman

Predictions only

Length 1,538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3Q12766 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC33.2■■■□□ 2.91
HMGXB3Q12766 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC33.2■■■□□ 2.91
HMGXB3Q12766 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.9
HMGXB3Q12766 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC33.2■■■□□ 2.9
HMGXB3Q12766 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC33.2■■■□□ 2.9
HMGXB3Q12766 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC33.2■■■□□ 2.9
HMGXB3Q12766 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC33.19■■■□□ 2.9
HMGXB3Q12766 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC33.19■■■□□ 2.9
HMGXB3Q12766 AL512353.2-201ENST00000448759 1962 ntBASIC33.19■■■□□ 2.9
HMGXB3Q12766 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC33.19■■■□□ 2.9
HMGXB3Q12766 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC33.19■■■□□ 2.9
HMGXB3Q12766 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC33.19■■■□□ 2.9
HMGXB3Q12766 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
HMGXB3Q12766 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC33.19■■■□□ 2.9
HMGXB3Q12766 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC33.19■■■□□ 2.9
HMGXB3Q12766 HNRNPDP1-201ENST00000439535 754 ntBASIC33.19■■■□□ 2.9
HMGXB3Q12766 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC33.19■■■□□ 2.9
HMGXB3Q12766 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
HMGXB3Q12766 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC33.19■■■□□ 2.9
HMGXB3Q12766 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
HMGXB3Q12766 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC33.19■■■□□ 2.9
HMGXB3Q12766 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
HMGXB3Q12766 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC33.18■■■□□ 2.9
HMGXB3Q12766 RBM17P3-201ENST00000417687 1192 ntBASIC33.18■■■□□ 2.9
HMGXB3Q12766 GPX1P2-201ENST00000429271 606 ntBASIC33.18■■■□□ 2.9
HMGXB3Q12766 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC33.18■■■□□ 2.9
HMGXB3Q12766 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC33.18■■■□□ 2.9
HMGXB3Q12766 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
HMGXB3Q12766 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
HMGXB3Q12766 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
HMGXB3Q12766 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC33.18■■■□□ 2.9
HMGXB3Q12766 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
HMGXB3Q12766 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC33.18■■■□□ 2.9
HMGXB3Q12766 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC33.18■■■□□ 2.9
HMGXB3Q12766 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
HMGXB3Q12766 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
HMGXB3Q12766 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC33.18■■■□□ 2.9
HMGXB3Q12766 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC33.18■■■□□ 2.9
HMGXB3Q12766 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC33.18■■■□□ 2.9
HMGXB3Q12766 AP001160.2-201ENST00000596071 487 ntBASIC33.18■■■□□ 2.9
HMGXB3Q12766 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC33.18■■■□□ 2.9
HMGXB3Q12766 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
HMGXB3Q12766 ZNF259P1-201ENST00000407656 1365 ntBASIC33.17■■■□□ 2.9
HMGXB3Q12766 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC33.17■■■□□ 2.9
HMGXB3Q12766 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC33.17■■■□□ 2.9
HMGXB3Q12766 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC33.17■■■□□ 2.9
HMGXB3Q12766 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC33.17■■■□□ 2.9
HMGXB3Q12766 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC33.17■■■□□ 2.9
HMGXB3Q12766 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
HMGXB3Q12766 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
HMGXB3Q12766 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
HMGXB3Q12766 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
HMGXB3Q12766 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC33.17■■■□□ 2.9
HMGXB3Q12766 HES2-202ENST00000377836 507 ntTSL 2 BASIC33.17■■■□□ 2.9
HMGXB3Q12766 UPF3AP3-201ENST00000420996 769 ntBASIC33.17■■■□□ 2.9
HMGXB3Q12766 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC33.17■■■□□ 2.9
HMGXB3Q12766 CD63-204ENST00000546939 779 ntTSL 3 BASIC33.17■■■□□ 2.9
HMGXB3Q12766 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC33.17■■■□□ 2.9
HMGXB3Q12766 AC010327.4-202ENST00000591484 748 ntBASIC33.17■■■□□ 2.9
HMGXB3Q12766 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC33.17■■■□□ 2.9
HMGXB3Q12766 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
HMGXB3Q12766 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
HMGXB3Q12766 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC33.17■■■□□ 2.9
HMGXB3Q12766 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC33.17■■■□□ 2.9
HMGXB3Q12766 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
HMGXB3Q12766 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC33.16■■■□□ 2.9
HMGXB3Q12766 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC33.16■■■□□ 2.9
HMGXB3Q12766 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC33.16■■■□□ 2.9
HMGXB3Q12766 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC33.16■■■□□ 2.9
HMGXB3Q12766 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC33.16■■■□□ 2.9
HMGXB3Q12766 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC33.16■■■□□ 2.9
HMGXB3Q12766 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC33.16■■■□□ 2.9
HMGXB3Q12766 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
HMGXB3Q12766 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC33.16■■■□□ 2.9
HMGXB3Q12766 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC33.16■■■□□ 2.9
HMGXB3Q12766 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC33.15■■■□□ 2.9
HMGXB3Q12766 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
HMGXB3Q12766 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC33.15■■■□□ 2.9
HMGXB3Q12766 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
HMGXB3Q12766 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC33.15■■■□□ 2.9
HMGXB3Q12766 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
HMGXB3Q12766 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
HMGXB3Q12766 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
HMGXB3Q12766 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC33.15■■■□□ 2.9
HMGXB3Q12766 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC33.15■■■□□ 2.9
HMGXB3Q12766 NMU-202ENST00000505262 693 ntTSL 3 BASIC33.15■■■□□ 2.9
HMGXB3Q12766 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC33.15■■■□□ 2.9
HMGXB3Q12766 PAM16-208ENST00000573553 722 ntTSL 2 BASIC33.15■■■□□ 2.9
HMGXB3Q12766 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
HMGXB3Q12766 FAM197Y3-203ENST00000618346 717 ntBASIC33.15■■■□□ 2.9
HMGXB3Q12766 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC33.15■■■□□ 2.9
HMGXB3Q12766 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC33.15■■■□□ 2.9
HMGXB3Q12766 AL162377.1-201ENST00000618844 1793 ntBASIC33.14■■■□□ 2.9
HMGXB3Q12766 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC33.14■■■□□ 2.9
HMGXB3Q12766 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC33.14■■■□□ 2.9
HMGXB3Q12766 CSF3-203ENST00000394148 622 ntTSL 3 BASIC33.14■■■□□ 2.9
HMGXB3Q12766 RPSAP43-201ENST00000402237 625 ntBASIC33.14■■■□□ 2.9
HMGXB3Q12766 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC33.14■■■□□ 2.9
HMGXB3Q12766 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC33.14■■■□□ 2.9
HMGXB3Q12766 AC034105.1-201ENST00000563488 319 ntBASIC33.14■■■□□ 2.9
Retrieved 100 of 98,524 protein–RNA pairs in 53.6 ms