Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.25■□□□□ 0.99
CIITAP33076 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CIITAP33076 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CIITAP33076 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CIITAP33076 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC21.25■□□□□ 0.99
CIITAP33076 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CIITAP33076 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CIITAP33076 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CIITAP33076 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CIITAP33076 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CIITAP33076 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CIITAP33076 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CIITAP33076 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CIITAP33076 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
CIITAP33076 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CIITAP33076 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CIITAP33076 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
CIITAP33076 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CIITAP33076 Telomerase-vert.1-201ENST00000363312 438 ntBASIC21.24■□□□□ 0.99
CIITAP33076 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC21.24■□□□□ 0.99
CIITAP33076 LTBR-211ENST00000543190 785 ntTSL 3 BASIC21.24■□□□□ 0.99
CIITAP33076 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC21.24■□□□□ 0.99
CIITAP33076 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21.24■□□□□ 0.99
CIITAP33076 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
CIITAP33076 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
CIITAP33076 NFYC-AS1-201ENST00000606277 1687 ntBASIC21.24■□□□□ 0.99
CIITAP33076 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CIITAP33076 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CIITAP33076 MTMR9LP-203ENST00000426597 1545 ntBASIC21.24■□□□□ 0.99
CIITAP33076 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC21.24■□□□□ 0.99
CIITAP33076 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.24■□□□□ 0.99
CIITAP33076 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CIITAP33076 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CIITAP33076 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CIITAP33076 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CIITAP33076 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CIITAP33076 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CIITAP33076 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
CIITAP33076 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC21.23■□□□□ 0.99
CIITAP33076 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CIITAP33076 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CIITAP33076 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC21.23■□□□□ 0.99
CIITAP33076 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC21.23■□□□□ 0.99
CIITAP33076 YBX1P2-201ENST00000489612 999 ntBASIC21.23■□□□□ 0.99
CIITAP33076 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC21.23■□□□□ 0.99
CIITAP33076 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CIITAP33076 AC139887.4-201ENST00000607877 719 ntBASIC21.23■□□□□ 0.99
CIITAP33076 AL031432.5-201ENST00000641059 760 ntBASIC21.23■□□□□ 0.99
CIITAP33076 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CIITAP33076 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CIITAP33076 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CIITAP33076 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CIITAP33076 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.23■□□□□ 0.99
CIITAP33076 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
CIITAP33076 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CIITAP33076 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC21.23■□□□□ 0.99
CIITAP33076 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CIITAP33076 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CIITAP33076 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
CIITAP33076 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC21.23■□□□□ 0.99
CIITAP33076 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CIITAP33076 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC21.23■□□□□ 0.99
CIITAP33076 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC21.23■□□□□ 0.99
CIITAP33076 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CIITAP33076 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CIITAP33076 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC21.22■□□□□ 0.99
CIITAP33076 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
CIITAP33076 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CIITAP33076 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC21.22■□□□□ 0.99
CIITAP33076 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC21.22■□□□□ 0.99
CIITAP33076 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC21.22■□□□□ 0.99
CIITAP33076 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
CIITAP33076 AP000523.1-201ENST00000398242 1049 ntBASIC21.22■□□□□ 0.99
CIITAP33076 DUX4L26-201ENST00000489078 1255 ntBASIC21.22■□□□□ 0.99
CIITAP33076 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CIITAP33076 AC011558.1-201ENST00000623459 338 ntBASIC21.22■□□□□ 0.99
CIITAP33076 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CIITAP33076 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CIITAP33076 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
CIITAP33076 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC21.22■□□□□ 0.99
CIITAP33076 AC006333.2-201ENST00000607957 2099 ntBASIC21.22■□□□□ 0.99
CIITAP33076 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CIITAP33076 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CIITAP33076 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CIITAP33076 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CIITAP33076 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC21.21■□□□□ 0.99
CIITAP33076 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CIITAP33076 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
CIITAP33076 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CIITAP33076 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CIITAP33076 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CIITAP33076 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC21.21■□□□□ 0.99
CIITAP33076 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC21.21■□□□□ 0.99
CIITAP33076 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC21.21■□□□□ 0.99
CIITAP33076 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC21.21■□□□□ 0.99
CIITAP33076 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC21.21■□□□□ 0.99
CIITAP33076 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CIITAP33076 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
CIITAP33076 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC21.21■□□□□ 0.99
CIITAP33076 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms