Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 PRSS29P-201ENST00000440800 595 ntBASIC19.68■□□□□ 0.74
COL6A3P12111 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC19.68■□□□□ 0.74
COL6A3P12111 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC19.68■□□□□ 0.74
COL6A3P12111 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC19.68■□□□□ 0.74
COL6A3P12111 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A3P12111 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC19.68■□□□□ 0.74
COL6A3P12111 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A3P12111 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
COL6A3P12111 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A3P12111 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC19.68■□□□□ 0.74
COL6A3P12111 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A3P12111 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.68■□□□□ 0.74
COL6A3P12111 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC19.68■□□□□ 0.74
COL6A3P12111 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A3P12111 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A3P12111 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL6A3P12111 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A3P12111 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A3P12111 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC19.67■□□□□ 0.74
COL6A3P12111 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A3P12111 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A3P12111 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
COL6A3P12111 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A3P12111 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A3P12111 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A3P12111 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.67■□□□□ 0.74
COL6A3P12111 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.67■□□□□ 0.74
COL6A3P12111 CCS-201ENST00000310190 942 ntTSL 5 BASIC19.67■□□□□ 0.74
COL6A3P12111 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A3P12111 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A3P12111 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A3P12111 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A3P12111 SMG8-203ENST00000578922 2178 ntBASIC19.67■□□□□ 0.74
COL6A3P12111 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC19.67■□□□□ 0.74
COL6A3P12111 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A3P12111 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A3P12111 FEM1AP1-201ENST00000431297 1995 ntBASIC19.67■□□□□ 0.74
COL6A3P12111 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.67■□□□□ 0.74
COL6A3P12111 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A3P12111 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC19.67■□□□□ 0.74
COL6A3P12111 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A3P12111 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC19.67■□□□□ 0.74
COL6A3P12111 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL6A3P12111 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
COL6A3P12111 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL6A3P12111 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL6A3P12111 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL6A3P12111 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL6A3P12111 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.66■□□□□ 0.74
COL6A3P12111 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.66■□□□□ 0.74
COL6A3P12111 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC19.66■□□□□ 0.74
COL6A3P12111 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COL6A3P12111 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.66■□□□□ 0.74
COL6A3P12111 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.66■□□□□ 0.74
COL6A3P12111 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.66■□□□□ 0.74
COL6A3P12111 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.66■□□□□ 0.74
COL6A3P12111 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COL6A3P12111 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL6A3P12111 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL6A3P12111 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
COL6A3P12111 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COL6A3P12111 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC19.66■□□□□ 0.74
COL6A3P12111 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL6A3P12111 FP700111.2-201ENST00000619190 1892 ntBASIC19.66■□□□□ 0.74
COL6A3P12111 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A3P12111 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A3P12111 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A3P12111 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A3P12111 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A3P12111 GPR32P1-201ENST00000601788 811 ntBASIC19.65■□□□□ 0.74
COL6A3P12111 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
COL6A3P12111 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A3P12111 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A3P12111 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A3P12111 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC19.65■□□□□ 0.74
COL6A3P12111 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.65■□□□□ 0.74
COL6A3P12111 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC19.65■□□□□ 0.74
COL6A3P12111 AC099343.3-201ENST00000605834 2503 ntBASIC19.65■□□□□ 0.74
COL6A3P12111 IGHGP-201ENST00000390555 1178 ntBASIC19.65■□□□□ 0.74
COL6A3P12111 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL6A3P12111 AC021087.4-201ENST00000563761 564 ntBASIC19.65■□□□□ 0.74
COL6A3P12111 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.74
COL6A3P12111 HEIH-201ENST00000623091 1652 ntBASIC19.64■□□□□ 0.74
COL6A3P12111 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL6A3P12111 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC19.64■□□□□ 0.73
COL6A3P12111 AC025062.2-201ENST00000605477 670 ntBASIC19.64■□□□□ 0.73
COL6A3P12111 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.64■□□□□ 0.73
COL6A3P12111 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL6A3P12111 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC19.64■□□□□ 0.73
COL6A3P12111 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.64■□□□□ 0.73
COL6A3P12111 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC19.64■□□□□ 0.73
COL6A3P12111 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC19.64■□□□□ 0.73
COL6A3P12111 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
COL6A3P12111 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.64■□□□□ 0.73
COL6A3P12111 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.63■□□□□ 0.73
COL6A3P12111 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A3P12111 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A3P12111 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
COL6A3P12111 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL6A3P12111 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms