Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A2P08572 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.01■□□□□ 0.63
COL4A2P08572 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A2P08572 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A2P08572 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
COL4A2P08572 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL4A2P08572 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.01■□□□□ 0.63
COL4A2P08572 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A2P08572 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A2P08572 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19■□□□□ 0.63
COL4A2P08572 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL4A2P08572 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A2P08572 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC19■□□□□ 0.63
COL4A2P08572 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL4A2P08572 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL4A2P08572 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19■□□□□ 0.63
COL4A2P08572 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL4A2P08572 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A2P08572 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
COL4A2P08572 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19■□□□□ 0.63
COL4A2P08572 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A2P08572 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL4A2P08572 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
COL4A2P08572 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC19■□□□□ 0.63
COL4A2P08572 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19■□□□□ 0.63
COL4A2P08572 AL662844.1-201ENST00000546340 181 ntBASIC19■□□□□ 0.63
COL4A2P08572 AC090616.6-201ENST00000582640 721 ntBASIC19■□□□□ 0.63
COL4A2P08572 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19■□□□□ 0.63
COL4A2P08572 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL4A2P08572 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A2P08572 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.99■□□□□ 0.63
COL4A2P08572 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A2P08572 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A2P08572 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
COL4A2P08572 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A2P08572 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
COL4A2P08572 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
COL4A2P08572 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A2P08572 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A2P08572 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A2P08572 KRT89P-201ENST00000620027 1478 ntBASIC18.99■□□□□ 0.63
COL4A2P08572 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A2P08572 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.99■□□□□ 0.63
COL4A2P08572 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.99■□□□□ 0.63
COL4A2P08572 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.99■□□□□ 0.63
COL4A2P08572 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.99■□□□□ 0.63
COL4A2P08572 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
COL4A2P08572 Z69720.1-201ENST00000601483 472 ntBASIC18.99■□□□□ 0.63
COL4A2P08572 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.99■□□□□ 0.63
COL4A2P08572 AL353801.3-201ENST00000609898 542 ntBASIC18.99■□□□□ 0.63
COL4A2P08572 GXYLT1P4-201ENST00000613576 1192 ntBASIC18.99■□□□□ 0.63
COL4A2P08572 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
COL4A2P08572 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A2P08572 TREX1-205ENST00000625293 1783 ntBASIC18.99■□□□□ 0.63
COL4A2P08572 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL4A2P08572 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A2P08572 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A2P08572 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A2P08572 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A2P08572 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A2P08572 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A2P08572 AC034236.2-201ENST00000606662 1610 ntBASIC18.98■□□□□ 0.63
COL4A2P08572 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A2P08572 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
COL4A2P08572 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A2P08572 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
COL4A2P08572 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.98■□□□□ 0.63
COL4A2P08572 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.98■□□□□ 0.63
COL4A2P08572 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.98■□□□□ 0.63
COL4A2P08572 AC091304.2-201ENST00000564639 760 ntBASIC18.98■□□□□ 0.63
COL4A2P08572 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.98■□□□□ 0.63
COL4A2P08572 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC18.98■□□□□ 0.63
COL4A2P08572 MIR7706-201ENST00000613747 67 ntBASIC18.98■□□□□ 0.63
COL4A2P08572 VPS51-217ENST00000639871 243 ntTSL 5 BASIC18.98■□□□□ 0.63
COL4A2P08572 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A2P08572 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A2P08572 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL4A2P08572 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.98■□□□□ 0.63
COL4A2P08572 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A2P08572 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.97■□□□□ 0.63
COL4A2P08572 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A2P08572 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.97■□□□□ 0.63
COL4A2P08572 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A2P08572 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.97■□□□□ 0.63
COL4A2P08572 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
COL4A2P08572 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.97■□□□□ 0.63
COL4A2P08572 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.97■□□□□ 0.63
COL4A2P08572 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.97■□□□□ 0.63
COL4A2P08572 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
COL4A2P08572 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
COL4A2P08572 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A2P08572 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A2P08572 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.97■□□□□ 0.63
COL4A2P08572 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A2P08572 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC18.97■□□□□ 0.63
COL4A2P08572 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL4A2P08572 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.97■□□□□ 0.63
COL4A2P08572 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
COL4A2P08572 NUS1P2-201ENST00000417358 873 ntBASIC18.97■□□□□ 0.63
COL4A2P08572 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms