Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.89■□□□□ 0.93
MMP3P08254 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MMP3P08254 UBQLN4P1-201ENST00000461599 1801 ntBASIC20.89■□□□□ 0.93
MMP3P08254 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20.89■□□□□ 0.93
MMP3P08254 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
MMP3P08254 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MMP3P08254 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
MMP3P08254 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
MMP3P08254 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.88■□□□□ 0.93
MMP3P08254 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
MMP3P08254 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.88■□□□□ 0.93
MMP3P08254 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.88■□□□□ 0.93
MMP3P08254 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MMP3P08254 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MMP3P08254 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.88■□□□□ 0.93
MMP3P08254 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MMP3P08254 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MMP3P08254 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MMP3P08254 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.88■□□□□ 0.93
MMP3P08254 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MMP3P08254 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MMP3P08254 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC20.88■□□□□ 0.93
MMP3P08254 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MMP3P08254 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.88■□□□□ 0.93
MMP3P08254 PRELID1P1-202ENST00000567272 903 ntBASIC20.88■□□□□ 0.93
MMP3P08254 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC20.88■□□□□ 0.93
MMP3P08254 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC20.88■□□□□ 0.93
MMP3P08254 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MMP3P08254 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
MMP3P08254 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MMP3P08254 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.88■□□□□ 0.93
MMP3P08254 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MMP3P08254 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC20.87■□□□□ 0.93
MMP3P08254 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MMP3P08254 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
MMP3P08254 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MMP3P08254 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.87■□□□□ 0.93
MMP3P08254 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MMP3P08254 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.87■□□□□ 0.93
MMP3P08254 CHCHD2P8-201ENST00000429873 447 ntBASIC20.87■□□□□ 0.93
MMP3P08254 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MMP3P08254 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MMP3P08254 RNF126P1-202ENST00000569893 925 ntBASIC20.87■□□□□ 0.93
MMP3P08254 VPS72-207ENST00000640458 689 ntTSL 5 BASIC20.87■□□□□ 0.93
MMP3P08254 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
MMP3P08254 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
MMP3P08254 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MMP3P08254 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.87■□□□□ 0.93
MMP3P08254 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MMP3P08254 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MMP3P08254 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
MMP3P08254 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MMP3P08254 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.86■□□□□ 0.93
MMP3P08254 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MMP3P08254 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.86■□□□□ 0.93
MMP3P08254 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MMP3P08254 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MMP3P08254 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MMP3P08254 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MMP3P08254 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MMP3P08254 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.86■□□□□ 0.93
MMP3P08254 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
MMP3P08254 TSPY22P-201ENST00000427496 604 ntBASIC20.86■□□□□ 0.93
MMP3P08254 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.86■□□□□ 0.93
MMP3P08254 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC20.86■□□□□ 0.93
MMP3P08254 SDHD-206ENST00000528182 754 ntTSL 3 BASIC20.86■□□□□ 0.93
MMP3P08254 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
MMP3P08254 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC20.86■□□□□ 0.93
MMP3P08254 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC20.86■□□□□ 0.93
MMP3P08254 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MMP3P08254 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
MMP3P08254 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.86■□□□□ 0.93
MMP3P08254 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
MMP3P08254 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MMP3P08254 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MMP3P08254 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MMP3P08254 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
MMP3P08254 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MMP3P08254 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC20.85■□□□□ 0.93
MMP3P08254 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC20.85■□□□□ 0.93
MMP3P08254 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MMP3P08254 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
MMP3P08254 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MMP3P08254 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.85■□□□□ 0.93
MMP3P08254 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MMP3P08254 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
MMP3P08254 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
MMP3P08254 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.85■□□□□ 0.93
MMP3P08254 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MMP3P08254 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
MMP3P08254 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
MMP3P08254 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.85■□□□□ 0.93
MMP3P08254 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC20.85■□□□□ 0.93
MMP3P08254 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC20.85■□□□□ 0.93
MMP3P08254 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.85■□□□□ 0.93
MMP3P08254 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.85■□□□□ 0.93
MMP3P08254 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
MMP3P08254 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
MMP3P08254 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
MMP3P08254 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms