Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
SDC3O75056 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SDC3O75056 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
SDC3O75056 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SDC3O75056 AC026396.1-201ENST00000419388 421 ntBASIC18.42■□□□□ 0.54
SDC3O75056 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.42■□□□□ 0.54
SDC3O75056 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.42■□□□□ 0.54
SDC3O75056 NPAP1P7-201ENST00000613027 823 ntBASIC18.42■□□□□ 0.54
SDC3O75056 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.42■□□□□ 0.54
SDC3O75056 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.42■□□□□ 0.54
SDC3O75056 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.42■□□□□ 0.54
SDC3O75056 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SDC3O75056 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SDC3O75056 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC18.42■□□□□ 0.54
SDC3O75056 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SDC3O75056 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.42■□□□□ 0.54
SDC3O75056 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
SDC3O75056 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
SDC3O75056 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
SDC3O75056 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.42■□□□□ 0.54
SDC3O75056 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
SDC3O75056 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SDC3O75056 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SDC3O75056 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
SDC3O75056 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
SDC3O75056 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.41■□□□□ 0.54
SDC3O75056 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SDC3O75056 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
SDC3O75056 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SDC3O75056 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SDC3O75056 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SDC3O75056 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SDC3O75056 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SDC3O75056 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SDC3O75056 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.41■□□□□ 0.54
SDC3O75056 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SDC3O75056 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SDC3O75056 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.41■□□□□ 0.54
SDC3O75056 IRF5-214ENST00000613821 595 ntTSL 5 BASIC18.41■□□□□ 0.54
SDC3O75056 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
SDC3O75056 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SDC3O75056 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SDC3O75056 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.41■□□□□ 0.54
SDC3O75056 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SDC3O75056 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
SDC3O75056 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SDC3O75056 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SDC3O75056 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SDC3O75056 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SDC3O75056 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SDC3O75056 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SDC3O75056 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.4■□□□□ 0.54
SDC3O75056 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SDC3O75056 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SDC3O75056 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SDC3O75056 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SDC3O75056 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SDC3O75056 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SDC3O75056 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
SDC3O75056 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SDC3O75056 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.4■□□□□ 0.54
SDC3O75056 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SDC3O75056 SEC1P-202ENST00000473944 940 ntBASIC18.4■□□□□ 0.54
SDC3O75056 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.4■□□□□ 0.54
SDC3O75056 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.4■□□□□ 0.54
SDC3O75056 AC011498.5-201ENST00000592027 486 ntBASIC18.4■□□□□ 0.54
SDC3O75056 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SDC3O75056 AL691432.3-201ENST00000621860 400 ntBASIC18.4■□□□□ 0.54
SDC3O75056 AL157888.1-201ENST00000631930 593 ntBASIC18.4■□□□□ 0.54
SDC3O75056 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC18.4■□□□□ 0.54
SDC3O75056 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SDC3O75056 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SDC3O75056 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SDC3O75056 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
SDC3O75056 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SDC3O75056 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC3O75056 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC3O75056 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.39■□□□□ 0.53
SDC3O75056 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.39■□□□□ 0.53
SDC3O75056 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC3O75056 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
SDC3O75056 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC3O75056 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SDC3O75056 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.39■□□□□ 0.53
SDC3O75056 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
SDC3O75056 TSSC2-201ENST00000450217 709 ntBASIC18.39■□□□□ 0.53
SDC3O75056 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.39■□□□□ 0.53
SDC3O75056 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.39■□□□□ 0.53
SDC3O75056 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC3O75056 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC3O75056 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
SDC3O75056 AC092329.2-201ENST00000598402 547 ntBASIC18.39■□□□□ 0.53
SDC3O75056 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.39■□□□□ 0.53
SDC3O75056 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
SDC3O75056 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SDC3O75056 AC079602.3-201ENST00000623931 403 ntBASIC18.39■□□□□ 0.53
SDC3O75056 AC112497.1-201ENST00000624824 639 ntBASIC18.39■□□□□ 0.53
SDC3O75056 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
SDC3O75056 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SDC3O75056 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms