Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNX3O60493 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNX3O60493 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.59■□□□□ 0.57
SNX3O60493 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
SNX3O60493 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SNX3O60493 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SNX3O60493 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
SNX3O60493 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SNX3O60493 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.59■□□□□ 0.57
SNX3O60493 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SNX3O60493 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SNX3O60493 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SNX3O60493 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SNX3O60493 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.58■□□□□ 0.57
SNX3O60493 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SNX3O60493 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
SNX3O60493 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.58■□□□□ 0.57
SNX3O60493 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SNX3O60493 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.58■□□□□ 0.57
SNX3O60493 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SNX3O60493 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SNX3O60493 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.58■□□□□ 0.57
SNX3O60493 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SNX3O60493 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SNX3O60493 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.58■□□□□ 0.56
SNX3O60493 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
SNX3O60493 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SNX3O60493 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SNX3O60493 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SNX3O60493 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SNX3O60493 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SNX3O60493 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SNX3O60493 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
SNX3O60493 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.58■□□□□ 0.56
SNX3O60493 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SNX3O60493 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.58■□□□□ 0.56
SNX3O60493 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SNX3O60493 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.58■□□□□ 0.56
SNX3O60493 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SNX3O60493 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.58■□□□□ 0.56
SNX3O60493 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
SNX3O60493 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SNX3O60493 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.58■□□□□ 0.56
SNX3O60493 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.56
SNX3O60493 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SNX3O60493 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
SNX3O60493 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.57■□□□□ 0.56
SNX3O60493 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.57■□□□□ 0.56
SNX3O60493 AD000864.1-201ENST00000624076 2295 ntBASIC18.57■□□□□ 0.56
SNX3O60493 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SNX3O60493 HTR7P1-202ENST00000624664 4411 ntBASIC18.57■□□□□ 0.56
SNX3O60493 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.57■□□□□ 0.56
SNX3O60493 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SNX3O60493 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
SNX3O60493 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC18.57■□□□□ 0.56
SNX3O60493 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SNX3O60493 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.57■□□□□ 0.56
SNX3O60493 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
SNX3O60493 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SNX3O60493 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SNX3O60493 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.57■□□□□ 0.56
SNX3O60493 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SNX3O60493 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SNX3O60493 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SNX3O60493 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SNX3O60493 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SNX3O60493 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC18.57■□□□□ 0.56
SNX3O60493 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SNX3O60493 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SNX3O60493 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SNX3O60493 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SNX3O60493 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SNX3O60493 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SNX3O60493 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SNX3O60493 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.56■□□□□ 0.56
SNX3O60493 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SNX3O60493 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SNX3O60493 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SNX3O60493 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
SNX3O60493 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SNX3O60493 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.56■□□□□ 0.56
SNX3O60493 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.56■□□□□ 0.56
SNX3O60493 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.56■□□□□ 0.56
SNX3O60493 AC110285.6-201ENST00000617652 491 ntBASIC18.56■□□□□ 0.56
SNX3O60493 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SNX3O60493 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SNX3O60493 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
SNX3O60493 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SNX3O60493 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.56■□□□□ 0.56
SNX3O60493 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SNX3O60493 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.56■□□□□ 0.56
SNX3O60493 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
SNX3O60493 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.55■□□□□ 0.56
SNX3O60493 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SNX3O60493 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SNX3O60493 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.55■□□□□ 0.56
SNX3O60493 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SNX3O60493 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.55■□□□□ 0.56
SNX3O60493 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SNX3O60493 AL355472.2-201ENST00000422958 438 ntBASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms