Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 AC123595.1-201ENST00000440769 1046 ntBASIC13.8□□□□□ -0.2
SMKR1H3BMG3 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 AL162412.1-201ENST00000567129 965 ntBASIC13.8□□□□□ -0.2
SMKR1H3BMG3 KRT18P61-201ENST00000585825 1298 ntBASIC13.8□□□□□ -0.2
SMKR1H3BMG3 AC100791.3-201ENST00000617619 330 ntBASIC13.8□□□□□ -0.2
SMKR1H3BMG3 AC083906.6-201ENST00000641366 219 ntBASIC13.8□□□□□ -0.2
SMKR1H3BMG3 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 TFP1-202ENST00000475455 1573 ntBASIC13.79□□□□□ -0.2
SMKR1H3BMG3 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 AK1-201ENST00000223836 736 ntTSL 3 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 GALNS-213ENST00000569433 723 ntTSL 3 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 AC009053.2-201ENST00000563701 2365 ntBASIC13.79□□□□□ -0.2
SMKR1H3BMG3 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 FST-202ENST00000396947 2538 ntTSL 5 BASIC13.79□□□□□ -0.2
SMKR1H3BMG3 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 LINC00896-202ENST00000609602 2128 ntBASIC13.78□□□□□ -0.2
SMKR1H3BMG3 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 AC134043.2-201ENST00000624206 2238 ntBASIC13.78□□□□□ -0.2
SMKR1H3BMG3 CROCCP1-201ENST00000426910 5675 ntBASIC13.78□□□□□ -0.2
SMKR1H3BMG3 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SMKR1H3BMG3 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms