Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC141257.4-201ENST00000634557 245 ntBASIC19.04■□□□□ 0.64
LHX3Q9UBR4 AC136944.6-201ENST00000634818 245 ntBASIC19.04■□□□□ 0.64
LHX3Q9UBR4 AC083906.6-201ENST00000641366 219 ntBASIC19.04■□□□□ 0.64
LHX3Q9UBR4 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LHX3Q9UBR4 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 TMPOP1-202ENST00000424642 1267 ntBASIC19.03■□□□□ 0.64
LHX3Q9UBR4 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 HEIH-201ENST00000623091 1652 ntBASIC19.03■□□□□ 0.64
LHX3Q9UBR4 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LHX3Q9UBR4 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.02■□□□□ 0.64
LHX3Q9UBR4 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LHX3Q9UBR4 AC006333.2-201ENST00000607957 2099 ntBASIC19.02■□□□□ 0.64
LHX3Q9UBR4 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
LHX3Q9UBR4 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LHX3Q9UBR4 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
LHX3Q9UBR4 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LHX3Q9UBR4 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.02■□□□□ 0.64
LHX3Q9UBR4 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LHX3Q9UBR4 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.02■□□□□ 0.64
LHX3Q9UBR4 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC19.02■□□□□ 0.64
LHX3Q9UBR4 AC009947.2-201ENST00000444014 672 ntBASIC19.02■□□□□ 0.64
LHX3Q9UBR4 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.02■□□□□ 0.64
LHX3Q9UBR4 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LHX3Q9UBR4 AL512604.3-201ENST00000569583 964 ntBASIC19.02■□□□□ 0.64
LHX3Q9UBR4 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.02■□□□□ 0.64
LHX3Q9UBR4 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LHX3Q9UBR4 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.02■□□□□ 0.64
LHX3Q9UBR4 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.02■□□□□ 0.64
LHX3Q9UBR4 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LHX3Q9UBR4 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.02■□□□□ 0.64
LHX3Q9UBR4 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.02■□□□□ 0.63
LHX3Q9UBR4 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
LHX3Q9UBR4 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
LHX3Q9UBR4 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 MTMR9LP-203ENST00000426597 1545 ntBASIC19.01■□□□□ 0.63
LHX3Q9UBR4 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 AC006011.2-201ENST00000621313 1158 ntBASIC19.01■□□□□ 0.63
LHX3Q9UBR4 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.01■□□□□ 0.63
LHX3Q9UBR4 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
LHX3Q9UBR4 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LHX3Q9UBR4 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LHX3Q9UBR4 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC19■□□□□ 0.63
LHX3Q9UBR4 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
LHX3Q9UBR4 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms