Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 RFPL4AP1-201ENST00000530883 850 ntBASIC18.68■□□□□ 0.58
VPS13AQ96RL7 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 BNIP3P18-201ENST00000593976 575 ntBASIC18.68■□□□□ 0.58
VPS13AQ96RL7 AL136038.4-201ENST00000603606 1261 ntBASIC18.68■□□□□ 0.58
VPS13AQ96RL7 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
VPS13AQ96RL7 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.67■□□□□ 0.58
VPS13AQ96RL7 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS13AQ96RL7 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC18.67■□□□□ 0.58
VPS13AQ96RL7 HLA-J-203ENST00000494367 1087 ntBASIC18.67■□□□□ 0.58
VPS13AQ96RL7 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS13AQ96RL7 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS13AQ96RL7 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS13AQ96RL7 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS13AQ96RL7 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
VPS13AQ96RL7 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS13AQ96RL7 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS13AQ96RL7 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.67■□□□□ 0.58
VPS13AQ96RL7 HLA-J-202ENST00000469281 1241 ntBASIC18.67■□□□□ 0.58
VPS13AQ96RL7 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS13AQ96RL7 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS13AQ96RL7 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS13AQ96RL7 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
VPS13AQ96RL7 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
VPS13AQ96RL7 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS13AQ96RL7 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS13AQ96RL7 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS13AQ96RL7 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS13AQ96RL7 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
VPS13AQ96RL7 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 AP005212.1-201ENST00000581547 1997 ntBASIC18.66■□□□□ 0.58
VPS13AQ96RL7 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS13AQ96RL7 DDT-203ENST00000403754 569 ntTSL 3 BASIC18.65■□□□□ 0.58
VPS13AQ96RL7 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.65■□□□□ 0.58
VPS13AQ96RL7 CYMP-203ENST00000474680 1263 ntBASIC18.65■□□□□ 0.58
VPS13AQ96RL7 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS13AQ96RL7 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS13AQ96RL7 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS13AQ96RL7 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS13AQ96RL7 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS13AQ96RL7 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS13AQ96RL7 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS13AQ96RL7 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS13AQ96RL7 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS13AQ96RL7 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS13AQ96RL7 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.65■□□□□ 0.58
VPS13AQ96RL7 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS13AQ96RL7 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS13AQ96RL7 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS13AQ96RL7 AC004967.1-201ENST00000453589 447 ntBASIC18.65■□□□□ 0.58
VPS13AQ96RL7 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.65■□□□□ 0.58
VPS13AQ96RL7 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
VPS13AQ96RL7 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS13AQ96RL7 AL592071.1-201ENST00000611956 408 ntBASIC18.65■□□□□ 0.58
VPS13AQ96RL7 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms