Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 TSPY17P-201ENST00000450329 467 ntBASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 CKBP1-201ENST00000565489 1086 ntBASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.2■□□□□ 0.5
CLIP3Q96DZ5 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 AC007663.1-201ENST00000438948 1240 ntBASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 AC010653.2-201ENST00000623505 997 ntBASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CLIP3Q96DZ5 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 AC020763.4-201ENST00000623414 4170 ntBASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.18■□□□□ 0.5
CLIP3Q96DZ5 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 AC104076.2-201ENST00000448912 469 ntBASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 DUX4L26-201ENST00000489078 1255 ntBASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 PRSS44-201ENST00000515154 1146 ntBASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.17■□□□□ 0.5
CLIP3Q96DZ5 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms