Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 KRT17P3-201ENST00000420566 1262 ntBASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 KRT18P6-201ENST00000555540 1265 ntBASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLIP4Q8N3C7 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.68■□□□□ 0.42
CLIP4Q8N3C7 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.68■□□□□ 0.42
CLIP4Q8N3C7 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP4Q8N3C7 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP4Q8N3C7 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP4Q8N3C7 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP4Q8N3C7 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
CLIP4Q8N3C7 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP4Q8N3C7 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CLIP4Q8N3C7 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP4Q8N3C7 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP4Q8N3C7 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP4Q8N3C7 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP4Q8N3C7 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP4Q8N3C7 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
CLIP4Q8N3C7 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP4Q8N3C7 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CLIP4Q8N3C7 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLIP4Q8N3C7 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CLIP4Q8N3C7 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CLIP4Q8N3C7 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms