Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC20.42■□□□□ 0.86
KRT39Q6A163 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.42■□□□□ 0.86
KRT39Q6A163 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
KRT39Q6A163 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.42■□□□□ 0.86
KRT39Q6A163 AC079598.2-202ENST00000546624 1451 ntBASIC20.42■□□□□ 0.86
KRT39Q6A163 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
KRT39Q6A163 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.42■□□□□ 0.86
KRT39Q6A163 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.42■□□□□ 0.86
KRT39Q6A163 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
KRT39Q6A163 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
KRT39Q6A163 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
KRT39Q6A163 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
KRT39Q6A163 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
KRT39Q6A163 AL512353.2-201ENST00000448759 1962 ntBASIC20.41■□□□□ 0.86
KRT39Q6A163 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
KRT39Q6A163 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
KRT39Q6A163 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
KRT39Q6A163 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
KRT39Q6A163 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
KRT39Q6A163 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.41■□□□□ 0.86
KRT39Q6A163 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.41■□□□□ 0.86
KRT39Q6A163 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.41■□□□□ 0.86
KRT39Q6A163 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
KRT39Q6A163 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
KRT39Q6A163 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC20.41■□□□□ 0.86
KRT39Q6A163 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
KRT39Q6A163 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
KRT39Q6A163 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
KRT39Q6A163 KRT8P32-201ENST00000512863 1461 ntBASIC20.41■□□□□ 0.86
KRT39Q6A163 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
KRT39Q6A163 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
KRT39Q6A163 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
KRT39Q6A163 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC20.41■□□□□ 0.86
KRT39Q6A163 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
KRT39Q6A163 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
KRT39Q6A163 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
KRT39Q6A163 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
KRT39Q6A163 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
KRT39Q6A163 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
KRT39Q6A163 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
KRT39Q6A163 CA15P1-201ENST00000481698 905 ntBASIC20.4■□□□□ 0.86
KRT39Q6A163 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.4■□□□□ 0.86
KRT39Q6A163 AP000525.1-201ENST00000608286 694 ntBASIC20.4■□□□□ 0.86
KRT39Q6A163 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
KRT39Q6A163 HEIH-201ENST00000623091 1652 ntBASIC20.4■□□□□ 0.86
KRT39Q6A163 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
KRT39Q6A163 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
KRT39Q6A163 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
KRT39Q6A163 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.4■□□□□ 0.86
KRT39Q6A163 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC20.39■□□□□ 0.86
KRT39Q6A163 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.86
KRT39Q6A163 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.39■□□□□ 0.86
KRT39Q6A163 AL031598.1-201ENST00000561511 1773 ntBASIC20.39■□□□□ 0.86
KRT39Q6A163 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
KRT39Q6A163 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
KRT39Q6A163 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
KRT39Q6A163 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
KRT39Q6A163 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
KRT39Q6A163 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
KRT39Q6A163 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.39■□□□□ 0.85
KRT39Q6A163 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.39■□□□□ 0.85
KRT39Q6A163 FITM1-202ENST00000559294 800 ntBASIC20.39■□□□□ 0.85
KRT39Q6A163 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.39■□□□□ 0.85
KRT39Q6A163 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
KRT39Q6A163 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.39■□□□□ 0.85
KRT39Q6A163 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
KRT39Q6A163 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC20.39■□□□□ 0.85
KRT39Q6A163 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
KRT39Q6A163 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
KRT39Q6A163 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.39■□□□□ 0.85
KRT39Q6A163 Z98044.1-201ENST00000632503 1764 ntBASIC20.39■□□□□ 0.85
KRT39Q6A163 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
KRT39Q6A163 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
KRT39Q6A163 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
KRT39Q6A163 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
KRT39Q6A163 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
KRT39Q6A163 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
KRT39Q6A163 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
KRT39Q6A163 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
KRT39Q6A163 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
KRT39Q6A163 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.38■□□□□ 0.85
KRT39Q6A163 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.38■□□□□ 0.85
KRT39Q6A163 AL596275.1-201ENST00000423464 877 ntBASIC20.38■□□□□ 0.85
KRT39Q6A163 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
KRT39Q6A163 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.38■□□□□ 0.85
KRT39Q6A163 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.38■□□□□ 0.85
KRT39Q6A163 AC068587.9-201ENST00000641814 219 ntBASIC20.38■□□□□ 0.85
KRT39Q6A163 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
KRT39Q6A163 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.38■□□□□ 0.85
KRT39Q6A163 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
KRT39Q6A163 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.38■□□□□ 0.85
KRT39Q6A163 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
KRT39Q6A163 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
KRT39Q6A163 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
KRT39Q6A163 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT39Q6A163 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC20.37■□□□□ 0.85
KRT39Q6A163 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
KRT39Q6A163 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
KRT39Q6A163 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC20.37■□□□□ 0.85
KRT39Q6A163 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms