Protein–RNA interactions for Protein: Q496Y0

LONRF3, LON peptidase N-terminal domain and RING finger protein 3, humanhuman

Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LONRF3Q496Y0 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
LONRF3Q496Y0 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
LONRF3Q496Y0 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC21.5■■□□□ 1.03
LONRF3Q496Y0 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC21.5■■□□□ 1.03
LONRF3Q496Y0 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LONRF3Q496Y0 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LONRF3Q496Y0 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC21.49■■□□□ 1.03
LONRF3Q496Y0 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC21.49■■□□□ 1.03
LONRF3Q496Y0 WIZP1-201ENST00000531444 2299 ntBASIC21.49■■□□□ 1.03
LONRF3Q496Y0 Z98044.1-201ENST00000632503 1764 ntBASIC21.49■■□□□ 1.03
LONRF3Q496Y0 AL353807.1-201ENST00000427475 662 ntBASIC21.49■■□□□ 1.03
LONRF3Q496Y0 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
LONRF3Q496Y0 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC21.49■■□□□ 1.03
LONRF3Q496Y0 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LONRF3Q496Y0 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC21.49■■□□□ 1.03
LONRF3Q496Y0 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC21.49■■□□□ 1.03
LONRF3Q496Y0 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LONRF3Q496Y0 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LONRF3Q496Y0 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC21.49■■□□□ 1.03
LONRF3Q496Y0 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LONRF3Q496Y0 ADK-206ENST00000541550 2222 ntTSL 2 BASIC21.49■■□□□ 1.03
LONRF3Q496Y0 SRI-203ENST00000419179 1307 ntTSL 2 BASIC21.49■■□□□ 1.03
LONRF3Q496Y0 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC21.49■■□□□ 1.03
LONRF3Q496Y0 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC21.49■■□□□ 1.03
LONRF3Q496Y0 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
LONRF3Q496Y0 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LONRF3Q496Y0 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC21.49■■□□□ 1.03
LONRF3Q496Y0 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC21.48■■□□□ 1.03
LONRF3Q496Y0 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
LONRF3Q496Y0 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC21.48■■□□□ 1.03
LONRF3Q496Y0 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
LONRF3Q496Y0 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LONRF3Q496Y0 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC21.48■■□□□ 1.03
LONRF3Q496Y0 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
LONRF3Q496Y0 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LONRF3Q496Y0 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
LONRF3Q496Y0 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LONRF3Q496Y0 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC21.48■■□□□ 1.03
LONRF3Q496Y0 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC21.48■■□□□ 1.03
LONRF3Q496Y0 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC21.48■■□□□ 1.03
LONRF3Q496Y0 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.48■■□□□ 1.03
LONRF3Q496Y0 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC21.48■■□□□ 1.03
LONRF3Q496Y0 AL353708.3-201ENST00000610272 989 ntBASIC21.48■■□□□ 1.03
LONRF3Q496Y0 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
LONRF3Q496Y0 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC21.48■■□□□ 1.03
LONRF3Q496Y0 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
LONRF3Q496Y0 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 GAS2L1P1-201ENST00000420145 1480 ntBASIC21.47■■□□□ 1.03
LONRF3Q496Y0 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 DECR2-212ENST00000627716 352 ntTSL 2 BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LONRF3Q496Y0 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 KRT8P41-201ENST00000533985 1514 ntBASIC21.46■■□□□ 1.03
LONRF3Q496Y0 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 TSPY23P-201ENST00000440136 739 ntBASIC21.46■■□□□ 1.03
LONRF3Q496Y0 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LONRF3Q496Y0 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC21.45■■□□□ 1.03
LONRF3Q496Y0 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms