Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.48■□□□□ 0.55
PTCHD3Q3KNS1 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 MIR6786-201ENST00000616843 113 ntBASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
PTCHD3Q3KNS1 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 AC008040.2-201ENST00000461049 708 ntBASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 AC011506.1-201ENST00000474329 610 ntBASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 AC011298.2-201ENST00000617989 482 ntBASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PTCHD3Q3KNS1 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 MESTP1-201ENST00000404287 994 ntBASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 FSCN1P1-201ENST00000568912 1481 ntBASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PTCHD3Q3KNS1 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 B3GAT3P1-201ENST00000471720 806 ntBASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 PRSS44-201ENST00000515154 1146 ntBASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 FITM1-202ENST00000559294 800 ntBASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 AC130371.2-201ENST00000619443 611 ntBASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.44■□□□□ 0.54
PTCHD3Q3KNS1 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms