Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC22.07■■□□□ 1.12
SHROOM1Q2M3G4 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC22.07■■□□□ 1.12
SHROOM1Q2M3G4 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC22.07■■□□□ 1.12
SHROOM1Q2M3G4 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC22.07■■□□□ 1.12
SHROOM1Q2M3G4 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC22.07■■□□□ 1.12
SHROOM1Q2M3G4 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 BCL10-202ENST00000620248 774 ntTSL 5 BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
SHROOM1Q2M3G4 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SHROOM1Q2M3G4 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SHROOM1Q2M3G4 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
SHROOM1Q2M3G4 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC22.04■■□□□ 1.12
SHROOM1Q2M3G4 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SHROOM1Q2M3G4 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC22.04■■□□□ 1.12
SHROOM1Q2M3G4 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC22.04■■□□□ 1.12
SHROOM1Q2M3G4 ATP5G2P1-201ENST00000433580 426 ntBASIC22.04■■□□□ 1.12
SHROOM1Q2M3G4 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC22.04■■□□□ 1.12
SHROOM1Q2M3G4 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SHROOM1Q2M3G4 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC22.04■■□□□ 1.12
SHROOM1Q2M3G4 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC22.04■■□□□ 1.12
SHROOM1Q2M3G4 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SHROOM1Q2M3G4 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
SHROOM1Q2M3G4 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SHROOM1Q2M3G4 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC22.04■■□□□ 1.12
SHROOM1Q2M3G4 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
SHROOM1Q2M3G4 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
SHROOM1Q2M3G4 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 AC112497.1-201ENST00000624824 639 ntBASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
SHROOM1Q2M3G4 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
SHROOM1Q2M3G4 AC016734.2-201ENST00000624325 1377 ntBASIC22.02■■□□□ 1.12
SHROOM1Q2M3G4 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
SHROOM1Q2M3G4 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC22.02■■□□□ 1.12
SHROOM1Q2M3G4 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
SHROOM1Q2M3G4 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
SHROOM1Q2M3G4 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms