Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC13.66□□□□□ -0.22
PRKDCP78527 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
PRKDCP78527 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC13.66□□□□□ -0.22
PRKDCP78527 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC13.66□□□□□ -0.22
PRKDCP78527 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC13.66□□□□□ -0.22
PRKDCP78527 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC13.66□□□□□ -0.22
PRKDCP78527 AL035252.4-201ENST00000624174 288 ntBASIC13.66□□□□□ -0.22
PRKDCP78527 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
PRKDCP78527 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC13.66□□□□□ -0.22
PRKDCP78527 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC13.66□□□□□ -0.22
PRKDCP78527 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
PRKDCP78527 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
PRKDCP78527 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
PRKDCP78527 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC13.66□□□□□ -0.22
PRKDCP78527 AC114341.1-201ENST00000618070 349 ntBASIC13.66□□□□□ -0.22
PRKDCP78527 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PRKDCP78527 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PRKDCP78527 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PRKDCP78527 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PRKDCP78527 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
PRKDCP78527 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PRKDCP78527 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC13.66□□□□□ -0.22
PRKDCP78527 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC13.66□□□□□ -0.22
PRKDCP78527 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
PRKDCP78527 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC13.65□□□□□ -0.22
PRKDCP78527 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
PRKDCP78527 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC13.65□□□□□ -0.22
PRKDCP78527 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
PRKDCP78527 HIST2H3DP1-201ENST00000401004 416 ntBASIC13.65□□□□□ -0.22
PRKDCP78527 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
PRKDCP78527 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
PRKDCP78527 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC13.65□□□□□ -0.22
PRKDCP78527 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC13.65□□□□□ -0.22
PRKDCP78527 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
PRKDCP78527 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
PRKDCP78527 COPE-202ENST00000349893 948 ntTSL 2 BASIC13.65□□□□□ -0.22
PRKDCP78527 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC13.65□□□□□ -0.22
PRKDCP78527 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
PRKDCP78527 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
PRKDCP78527 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
PRKDCP78527 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
PRKDCP78527 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC13.65□□□□□ -0.22
PRKDCP78527 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
PRKDCP78527 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
PRKDCP78527 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
PRKDCP78527 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
PRKDCP78527 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
PRKDCP78527 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
PRKDCP78527 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
PRKDCP78527 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
PRKDCP78527 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC13.65□□□□□ -0.22
PRKDCP78527 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
PRKDCP78527 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
PRKDCP78527 AC121338.2-201ENST00000622535 1744 ntBASIC13.65□□□□□ -0.22
PRKDCP78527 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
PRKDCP78527 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.23
PRKDCP78527 AP001271.2-201ENST00000624018 1556 ntBASIC13.64□□□□□ -0.23
PRKDCP78527 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PRKDCP78527 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC13.64□□□□□ -0.23
PRKDCP78527 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PRKDCP78527 AC104417.2-201ENST00000562989 1793 ntBASIC13.64□□□□□ -0.23
PRKDCP78527 SYS1-203ENST00000414310 795 ntTSL 3 BASIC13.64□□□□□ -0.23
PRKDCP78527 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC13.64□□□□□ -0.23
PRKDCP78527 RN7SL606P-201ENST00000472779 293 ntBASIC13.64□□□□□ -0.23
PRKDCP78527 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC13.64□□□□□ -0.23
PRKDCP78527 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC13.64□□□□□ -0.23
PRKDCP78527 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC13.64□□□□□ -0.23
PRKDCP78527 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC13.64□□□□□ -0.23
PRKDCP78527 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PRKDCP78527 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC13.64□□□□□ -0.23
PRKDCP78527 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC13.64□□□□□ -0.23
PRKDCP78527 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
PRKDCP78527 AL162377.1-201ENST00000618844 1793 ntBASIC13.64□□□□□ -0.23
PRKDCP78527 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PRKDCP78527 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC13.64□□□□□ -0.23
PRKDCP78527 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PRKDCP78527 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC13.64□□□□□ -0.23
PRKDCP78527 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC13.64□□□□□ -0.23
PRKDCP78527 MIR4469-201ENST00000583919 79 ntBASIC13.64□□□□□ -0.23
PRKDCP78527 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC13.64□□□□□ -0.23
PRKDCP78527 AC124864.1-201ENST00000623408 392 ntBASIC13.64□□□□□ -0.23
PRKDCP78527 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
PRKDCP78527 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
PRKDCP78527 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PRKDCP78527 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
PRKDCP78527 Z98882.1-201ENST00000622160 2253 ntBASIC13.64□□□□□ -0.23
PRKDCP78527 RPS2P1-201ENST00000434010 821 ntBASIC13.64□□□□□ -0.23
PRKDCP78527 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC13.64□□□□□ -0.23
PRKDCP78527 MTDHP5-201ENST00000598980 586 ntBASIC13.64□□□□□ -0.23
PRKDCP78527 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC13.64□□□□□ -0.23
PRKDCP78527 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC13.64□□□□□ -0.23
PRKDCP78527 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
PRKDCP78527 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
PRKDCP78527 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC13.63□□□□□ -0.23
PRKDCP78527 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
PRKDCP78527 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC13.63□□□□□ -0.23
PRKDCP78527 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PRKDCP78527 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC13.63□□□□□ -0.23
PRKDCP78527 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
PRKDCP78527 PMP22-202ENST00000395936 816 ntTSL 3 BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms