Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CL1P78423 KRT16P1-201ENST00000399124 1418 ntBASIC15.23■□□□□ 0.03
CX3CL1P78423 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CL1P78423 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CL1P78423 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CX3CL1P78423 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
CX3CL1P78423 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CL1P78423 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CL1P78423 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CL1P78423 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC15.22■□□□□ 0.03
CX3CL1P78423 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
CX3CL1P78423 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CL1P78423 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CL1P78423 AL049812.1-201ENST00000432563 2267 ntBASIC15.22■□□□□ 0.03
CX3CL1P78423 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CL1P78423 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CL1P78423 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CX3CL1P78423 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CL1P78423 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
CX3CL1P78423 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
CX3CL1P78423 AC012618.2-201ENST00000428058 849 ntBASIC15.22■□□□□ 0.03
CX3CL1P78423 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CL1P78423 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC15.22■□□□□ 0.03
CX3CL1P78423 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CL1P78423 Z85996.1-201ENST00000494644 937 ntBASIC15.22■□□□□ 0.03
CX3CL1P78423 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC15.22■□□□□ 0.03
CX3CL1P78423 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC15.22■□□□□ 0.03
CX3CL1P78423 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CL1P78423 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CX3CL1P78423 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC15.22■□□□□ 0.03
CX3CL1P78423 AP001412.1-201ENST00000608405 714 ntBASIC15.22■□□□□ 0.03
CX3CL1P78423 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC15.22■□□□□ 0.03
CX3CL1P78423 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC15.22■□□□□ 0.03
CX3CL1P78423 AL031985.4-201ENST00000642138 673 ntBASIC15.22■□□□□ 0.03
CX3CL1P78423 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CL1P78423 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CL1P78423 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC15.22■□□□□ 0.03
CX3CL1P78423 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC15.22■□□□□ 0.03
CX3CL1P78423 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC15.22■□□□□ 0.03
CX3CL1P78423 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CL1P78423 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CX3CL1P78423 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CL1P78423 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CL1P78423 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC15.22■□□□□ 0.03
CX3CL1P78423 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC15.22■□□□□ 0.03
CX3CL1P78423 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CL1P78423 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CL1P78423 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC15.22■□□□□ 0.03
CX3CL1P78423 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CX3CL1P78423 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CL1P78423 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CL1P78423 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CX3CL1P78423 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
CX3CL1P78423 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CL1P78423 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC15.21■□□□□ 0.03
CX3CL1P78423 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC15.21■□□□□ 0.03
CX3CL1P78423 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CL1P78423 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CL1P78423 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CL1P78423 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC15.21■□□□□ 0.03
CX3CL1P78423 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC15.21■□□□□ 0.03
CX3CL1P78423 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CL1P78423 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CL1P78423 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
CX3CL1P78423 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CL1P78423 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CL1P78423 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CL1P78423 PTPA-216ENST00000432651 857 ntTSL 2 BASIC15.21■□□□□ 0.03
CX3CL1P78423 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC15.21■□□□□ 0.03
CX3CL1P78423 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
CX3CL1P78423 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC15.21■□□□□ 0.03
CX3CL1P78423 CD177P1-201ENST00000606252 935 ntBASIC15.21■□□□□ 0.03
CX3CL1P78423 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC15.21■□□□□ 0.03
CX3CL1P78423 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC15.21■□□□□ 0.03
CX3CL1P78423 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC15.21■□□□□ 0.03
CX3CL1P78423 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CL1P78423 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC15.21■□□□□ 0.03
CX3CL1P78423 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CL1P78423 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CX3CL1P78423 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
CX3CL1P78423 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CX3CL1P78423 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC15.21■□□□□ 0.02
CX3CL1P78423 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC15.21■□□□□ 0.02
CX3CL1P78423 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
CX3CL1P78423 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CX3CL1P78423 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
CX3CL1P78423 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC15.2■□□□□ 0.02
CX3CL1P78423 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC15.2■□□□□ 0.02
CX3CL1P78423 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CX3CL1P78423 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CX3CL1P78423 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC15.2■□□□□ 0.02
CX3CL1P78423 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CL1P78423 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CL1P78423 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC15.2■□□□□ 0.02
CX3CL1P78423 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CL1P78423 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CL1P78423 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CX3CL1P78423 FAM197Y1-201ENST00000421178 764 ntBASIC15.2■□□□□ 0.02
CX3CL1P78423 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC15.2■□□□□ 0.02
CX3CL1P78423 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms