Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC16.48■□□□□ 0.23
COL8A1P27658 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL8A1P27658 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.48■□□□□ 0.23
COL8A1P27658 HLA-F-220ENST00000434407 884 ntBASIC16.48■□□□□ 0.23
COL8A1P27658 FAM197Y8-203ENST00000450145 560 ntBASIC16.48■□□□□ 0.23
COL8A1P27658 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.48■□□□□ 0.23
COL8A1P27658 AC106730.1-201ENST00000566722 1090 ntBASIC16.48■□□□□ 0.23
COL8A1P27658 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.48■□□□□ 0.23
COL8A1P27658 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC16.48■□□□□ 0.23
COL8A1P27658 AL136038.4-201ENST00000603606 1261 ntBASIC16.48■□□□□ 0.23
COL8A1P27658 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.48■□□□□ 0.23
COL8A1P27658 AL773604.1-201ENST00000617417 272 ntBASIC16.48■□□□□ 0.23
COL8A1P27658 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL8A1P27658 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC16.48■□□□□ 0.23
COL8A1P27658 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
COL8A1P27658 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL8A1P27658 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.48■□□□□ 0.23
COL8A1P27658 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
COL8A1P27658 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL8A1P27658 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL8A1P27658 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
COL8A1P27658 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC16.47■□□□□ 0.23
COL8A1P27658 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
COL8A1P27658 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL8A1P27658 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL8A1P27658 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC16.47■□□□□ 0.23
COL8A1P27658 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL8A1P27658 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL8A1P27658 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC16.47■□□□□ 0.23
COL8A1P27658 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL8A1P27658 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC16.47■□□□□ 0.23
COL8A1P27658 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL8A1P27658 AL391807.1-203ENST00000604392 2365 ntBASIC16.47■□□□□ 0.23
COL8A1P27658 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL8A1P27658 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL8A1P27658 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL8A1P27658 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
COL8A1P27658 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.47■□□□□ 0.23
COL8A1P27658 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC16.47■□□□□ 0.23
COL8A1P27658 SAPCD2P3-201ENST00000455031 850 ntBASIC16.47■□□□□ 0.23
COL8A1P27658 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.47■□□□□ 0.23
COL8A1P27658 NME1-207ENST00000480143 964 ntTSL 2 BASIC16.47■□□□□ 0.23
COL8A1P27658 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.47■□□□□ 0.23
COL8A1P27658 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL8A1P27658 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
COL8A1P27658 TK1-205ENST00000590862 642 ntTSL 3 BASIC16.47■□□□□ 0.23
COL8A1P27658 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
COL8A1P27658 AC064862.7-201ENST00000604520 867 ntBASIC16.47■□□□□ 0.23
COL8A1P27658 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
COL8A1P27658 AC148477.8-201ENST00000624298 468 ntBASIC16.47■□□□□ 0.23
COL8A1P27658 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.47■□□□□ 0.23
COL8A1P27658 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL8A1P27658 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
COL8A1P27658 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL8A1P27658 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL8A1P27658 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL8A1P27658 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL8A1P27658 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL8A1P27658 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC16.47■□□□□ 0.23
COL8A1P27658 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
COL8A1P27658 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL8A1P27658 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL8A1P27658 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL8A1P27658 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.46■□□□□ 0.23
COL8A1P27658 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL8A1P27658 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
COL8A1P27658 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL8A1P27658 Z83836.1-201ENST00000624605 1642 ntBASIC16.46■□□□□ 0.23
COL8A1P27658 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC16.46■□□□□ 0.23
COL8A1P27658 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL8A1P27658 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL8A1P27658 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC16.46■□□□□ 0.23
COL8A1P27658 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
COL8A1P27658 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.46■□□□□ 0.23
COL8A1P27658 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL8A1P27658 AL031284.1-201ENST00000419297 478 ntBASIC16.46■□□□□ 0.23
COL8A1P27658 PMS2P2-201ENST00000425039 1128 ntBASIC16.46■□□□□ 0.23
COL8A1P27658 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.46■□□□□ 0.23
COL8A1P27658 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL8A1P27658 IGHV3-41-201ENST00000613121 348 ntBASIC16.46■□□□□ 0.23
COL8A1P27658 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC16.46■□□□□ 0.23
COL8A1P27658 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL8A1P27658 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL8A1P27658 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL8A1P27658 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
COL8A1P27658 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC16.46■□□□□ 0.23
COL8A1P27658 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
COL8A1P27658 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC16.46■□□□□ 0.22
COL8A1P27658 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
COL8A1P27658 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL8A1P27658 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC16.45■□□□□ 0.22
COL8A1P27658 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL8A1P27658 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL8A1P27658 RPS8P6-201ENST00000426177 609 ntBASIC16.45■□□□□ 0.22
COL8A1P27658 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.45■□□□□ 0.22
COL8A1P27658 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.45■□□□□ 0.22
COL8A1P27658 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.45■□□□□ 0.22
COL8A1P27658 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.45■□□□□ 0.22
COL8A1P27658 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL8A1P27658 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms