Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
COL5A3P25940 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
COL5A3P25940 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC23.84■■□□□ 1.41
COL5A3P25940 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC23.84■■□□□ 1.41
COL5A3P25940 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC23.84■■□□□ 1.41
COL5A3P25940 AP003733.1-201ENST00000491725 852 ntBASIC23.84■■□□□ 1.41
COL5A3P25940 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC23.84■■□□□ 1.41
COL5A3P25940 AC091304.2-201ENST00000564639 760 ntBASIC23.84■■□□□ 1.41
COL5A3P25940 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
COL5A3P25940 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC23.83■■□□□ 1.41
COL5A3P25940 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
COL5A3P25940 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
COL5A3P25940 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC23.83■■□□□ 1.41
COL5A3P25940 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
COL5A3P25940 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC23.83■■□□□ 1.41
COL5A3P25940 IGHGP-201ENST00000390555 1178 ntBASIC23.83■■□□□ 1.41
COL5A3P25940 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC23.83■■□□□ 1.41
COL5A3P25940 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC23.83■■□□□ 1.41
COL5A3P25940 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
COL5A3P25940 VPS51-217ENST00000639871 243 ntTSL 5 BASIC23.83■■□□□ 1.41
COL5A3P25940 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC23.83■■□□□ 1.41
COL5A3P25940 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC23.83■■□□□ 1.41
COL5A3P25940 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC23.83■■□□□ 1.41
COL5A3P25940 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC23.83■■□□□ 1.4
COL5A3P25940 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
COL5A3P25940 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC23.82■■□□□ 1.4
COL5A3P25940 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL5A3P25940 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL5A3P25940 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL5A3P25940 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC23.82■■□□□ 1.4
COL5A3P25940 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC23.82■■□□□ 1.4
COL5A3P25940 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL5A3P25940 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC23.82■■□□□ 1.4
COL5A3P25940 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC23.82■■□□□ 1.4
COL5A3P25940 MIR7706-201ENST00000613747 67 ntBASIC23.82■■□□□ 1.4
COL5A3P25940 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL5A3P25940 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
COL5A3P25940 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
COL5A3P25940 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC23.82■■□□□ 1.4
COL5A3P25940 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
COL5A3P25940 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
COL5A3P25940 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC23.82■■□□□ 1.4
COL5A3P25940 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
COL5A3P25940 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
COL5A3P25940 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC23.82■■□□□ 1.4
COL5A3P25940 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC23.82■■□□□ 1.4
COL5A3P25940 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
COL5A3P25940 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
COL5A3P25940 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC23.81■■□□□ 1.4
COL5A3P25940 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC23.81■■□□□ 1.4
COL5A3P25940 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC23.81■■□□□ 1.4
COL5A3P25940 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL5A3P25940 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
COL5A3P25940 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC23.81■■□□□ 1.4
COL5A3P25940 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC23.81■■□□□ 1.4
COL5A3P25940 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
COL5A3P25940 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC23.81■■□□□ 1.4
COL5A3P25940 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
COL5A3P25940 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL5A3P25940 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
COL5A3P25940 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC23.81■■□□□ 1.4
COL5A3P25940 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC23.81■■□□□ 1.4
COL5A3P25940 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL5A3P25940 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL5A3P25940 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
COL5A3P25940 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC23.81■■□□□ 1.4
COL5A3P25940 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC23.81■■□□□ 1.4
COL5A3P25940 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
COL5A3P25940 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC23.81■■□□□ 1.4
COL5A3P25940 IGHV3OR16-7-201ENST00000604106 360 ntBASIC23.81■■□□□ 1.4
COL5A3P25940 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL5A3P25940 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC23.81■■□□□ 1.4
COL5A3P25940 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL5A3P25940 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
COL5A3P25940 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL5A3P25940 KRT89P-201ENST00000620027 1478 ntBASIC23.81■■□□□ 1.4
COL5A3P25940 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL5A3P25940 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL5A3P25940 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL5A3P25940 NUS1P2-201ENST00000417358 873 ntBASIC23.8■■□□□ 1.4
COL5A3P25940 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC23.8■■□□□ 1.4
COL5A3P25940 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC23.8■■□□□ 1.4
COL5A3P25940 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL5A3P25940 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
COL5A3P25940 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL5A3P25940 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL5A3P25940 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL5A3P25940 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC23.79■■□□□ 1.4
COL5A3P25940 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
COL5A3P25940 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC23.79■■□□□ 1.4
COL5A3P25940 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC23.79■■□□□ 1.4
COL5A3P25940 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
COL5A3P25940 AC006538.3-201ENST00000612495 578 ntBASIC23.79■■□□□ 1.4
COL5A3P25940 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC23.79■■□□□ 1.4
COL5A3P25940 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL5A3P25940 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL5A3P25940 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
COL5A3P25940 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL5A3P25940 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
COL5A3P25940 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms